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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G139300.1 | ||||||||
Common Name | POPTR_0012s13390g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 749aa MW: 82431.5 Da PI: 5.5728 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.1 | 1e-20 | 53 | 108 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k ++t++q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k Potri.012G139300.1 53 RKKYNRHTANQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 108 79999************************************************999 PP | |||||||
2 | START | 176.2 | 2e-55 | 258 | 479 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 la++a++el+k+a+ e+p W ks e +n +e++++f++ + + +ea r+sgvv + lve+l+d++ W e+++ +a+ Potri.012G139300.1 258 LALAAMDELIKMAQIESPIWIKSLdggkEVLNHEEYTRTFPRIGMkpsnFVTEATRVSGVVLVNISALVETLMDVN-GWVEMFPsliaRAA 347 6899**********************9999**********8866699999**************************.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 t++ issg galq + ae+q++sp vp R + f+R ++ql++g+w++vdvS+d +q++ + + v +++lpSg++i+++ ng skv Potri.012G139300.1 348 TTDIISSGmggtksGALQMIHAEFQLISPFVPvRQVKFLRLCKQLTEGVWAVVDVSIDANQENLNAQAPVTCKRLPSGCIIQDMNNGCSKV 438 ***************************************************************998888889******************* PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 twveh +++++ +h+l+r++++sg+ +ga++w+a+lqr+ e Potri.012G139300.1 439 TWVEHSEYDESAVHQLYRPILSSGRGFGAQRWLAALQRYYE 479 *************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.09E-19 | 39 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-22 | 40 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.253 | 50 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-18 | 52 | 114 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-18 | 53 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.61E-19 | 53 | 110 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 37.884 | 248 | 483 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.15E-31 | 249 | 479 | No hit | No description |
CDD | cd08875 | 4.78E-111 | 252 | 476 | No hit | No description |
SMART | SM00234 | 1.4E-39 | 257 | 480 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-47 | 258 | 478 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.71E-15 | 508 | 744 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MDGRGDMGLF GEHFDPCLVG RIKEDGYESR SGSDNIEGAS GEDQDVGDDQ RPRKKYNRHT 60 ANQIQELESF FKECPHPDEK QRSELSRRLG LESKQIKFWF QNRRTQMKTQ LERHENVILR 120 QDNDKLRLEN ELLKQNMSDP ICNNCGGPVV PGPVSDEQQQ LRIENARLTD ELGRVCALAN 180 KFLGRPLTSS ANPIPPFSTN SKLDLAVGIN GYGNLGHTDN MLPMGLDNNR GIMMPLMKPI 240 GNAVGKEVPH DRSIFVDLAL AAMDELIKMA QIESPIWIKS LDGGKEVLNH EEYTRTFPRI 300 GMKPSNFVTE ATRVSGVVLV NISALVETLM DVNGWVEMFP SLIARAATTD IISSGMGGTK 360 SGALQMIHAE FQLISPFVPV RQVKFLRLCK QLTEGVWAVV DVSIDANQEN LNAQAPVTCK 420 RLPSGCIIQD MNNGCSKVTW VEHSEYDESA VHQLYRPILS SGRGFGAQRW LAALQRYYEG 480 MAMIMSPSIL GEDQTVINLG GKKSMLKLAR RMVDNFCSGV CASSLHNWGN LVAGNVSEDV 540 RILTRKSINE PGEPDGIVLS AATSVWLPVS RQRLFDFLRD EQSRSHWDIL SNGGMLQEII 600 QIPKGQGQCN RVSLLRSTAV DADAGENNML ILQETRNDVS GSQVVYAPVD IQSMSVVTSG 660 GDSTYVALLP SGFVILPDNS FSNGEPSNSD GNPVKRDSDS NNGGGSFFTV GFQILASNLP 720 SAKLTVESVE TIHNLISCTM QRIRTAFN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G139300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438602.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | B9I4A9 | 0.0 | B9I4A9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s13390.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G139300.1 |
Entrez Gene | 7484390 |
Publications ? help Back to Top | |||
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