PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G138900.1
Common NamePOPTR_0012s13430g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 302aa    MW: 33366.2 Da    PI: 4.7715
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G138900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.2e-36301202101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+i++d+++++++sw+e+g+sf+v+d++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF++g+k+
  Potri.012G138900.1  30 FLTKTYQIVDDHTIDDVVSWNEDGSSFIVWDPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNESFRRGEKN 111
                         9*****************************************************************99.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll +i+r+k
  Potri.012G138900.1 112 LLANIQRRK 120
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-5626119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-3427119IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.2E-203053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3230119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSPPPLVEQN STDTPTTGGG ETSRTIPTPF LTKTYQIVDD HTIDDVVSWN EDGSSFIVWD  60
PTVFARDLLP KYFKHNNFSS FVRQLNTYGF RKVVPDRWEF SNESFRRGEK NLLANIQRRK  120
IPAVVTAPAA VVPAMVKTSS NSSSDEQVIS RSSSPGLSVD LIDENERLRK ENVQLKGELT  180
EMKSLCANIF SLVSTYANSR EGKGVRKMLD LLPMKEEERE GARIFGVEVG VKRGREGSGD  240
MEEGEAEGEE DGMQLQLRQP GCGGGLKIET NGCQDGNSNG GGDQDAPWLE QCHRLNQKMC  300
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2671197129Heat shock factor protein 1
5d5v_B5e-2671197129Heat shock factor protein 1
5d5v_D5e-2671197129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G138900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140050.0KP014005.1 Populus simonii heat shock transcription factor B2a1 (HsfB2a1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438410.10.0heat stress transcription factor B-2a
SwissprotQ9SCW41e-84HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLB9I4B30.0B9I4B3_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-75heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]