PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.012G137500.1

Common Name

POPTR_0012s13550g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 1108aa MW: 127102 Da PI: 6.0929

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G137500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.1	9.3e-26	60	146	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YAk+vGFsvrk+ ++sk +g +++r+f+Cskeg+r+++k++ + +++r+etrtgC a++ v+++ d+k++vt++e eHnH+ Potri.012G137500.1 60 RFYNKYAKTVGFSVRKDWVNRSKVHGLVVSRKFTCSKEGYRRKDKRD-LNVKKHRKETRTGCLAHMIVTRQPDAKYRVTHFEAEHNHD 146 5*****************************************999.99999********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-23	60	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-27	270	364	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.507	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF00657	1.2E-9	873	1069	IPR001087	GDSL lipase/esterase
Gene3D	G3DSA:3.40.50.1110	1.7E-41	882	1074	IPR013830	SGNH hydrolase-type esterase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence Send to blast
MEIGLQKSDK LDLNLDQDCR SLNFALVNSS QFSNSSKDGV NIGGVLKIGT EFESDEHAYR 60 FYNKYAKTVG FSVRKDWVNR SKVHGLVVSR KFTCSKEGYR RKDKRDLNVK KHRKETRTGC 120 LAHMIVTRQP DAKYRVTHFE AEHNHDNIDP NNAESQLLWR EIHVDQAAEG DLPSNSGTES 180 SSTFELVNRQ FEVWKSLDQL AMDFDNSLRS QRIRDMKEGE AGRLLRYFQR QHIENPSFIH 240 SIQVDIDDKV SNIFWADDKM VVDYDHFGDV VCLDTSYRMN KDLQPFVQFI GVNHHNQAII 300 FAAALLFDDT VESLKWLFNT FLEAMSGKKP KVILTDQDAA IVEAINSILP ETSHRICVWQ 360 MYQNALKHLS LVVKDMESFS NDFRSCIYDY NNEEAFVHAW EGLLDKYGLQ QNDRLRWMFR 420 EREKWSIAYG RNTFFLDMKG SHVAEDLSNN LRSYLNSDQD ALQIYKIFER VADEQRFKET 480 HANDEMTRSM PRLLGNVALL KHASGIYTPK AFELFQKEYE KCLNVVVTQC NEKGFLLEYK 540 VSTFGQTQEY TVIFNSADDT VVCNCMKFEN VGFLCGHALK VLDNWNIKVV PSRYILKRWT 600 KDTRLGRVRD SGEFTAKENL KLAVASRYKD LCRNIIKISA RAAESEDAFQ FALRQLDELI 660 EGVEKILMLK AEEGQGITSS STVVNGFESE NAEFFLDEEE IEDQGEDNRV DGTKEKESAA 720 PDRHQLKNIN EKSCKKKRFQ LGQTPSPNTS SCISSPPQAR VMTEGQSHNP LLQVVQCMYQ 780 QQNPVMDHED NPNMYQQSVF YADQHVSPTQ IPLLQEPLIR SAYHESLTNN ALFRQLSTII 840 DNVSVTTDNM ILLYGKGQRY TMDFQLYNHK IIASRIAKEL GGADVAKKYL GQCIYAVETG 900 YNDYLNNYYG EGYNTSNIYT PEQFSQLLVQ TYEIQLERLY NEGARKVAVF GLIRIGCMPA 960 YKQIFGANES SCVDKLNHAA QLFNNELQKA LPKLNANLPG AKFTYINSYE IDSENYTDLG 1020 FKFTNKSCCD VPSDQIPCAA LTYPCLNRDE HVYWDGAHYT EARARIFAKR AYKRQFPVDA 1080 YPYDISELAK VPNDEADGCS TCGSKIL*

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence Send to blast

MEIGLQKSDK LDLNLDQDCR SLNFALVNSS QFSNSSKDGV NIGGVLKIGT EFESDEHAYR  60
FYNKYAKTVG FSVRKDWVNR SKVHGLVVSR KFTCSKEGYR RKDKRDLNVK KHRKETRTGC  120
LAHMIVTRQP DAKYRVTHFE AEHNHDNIDP NNAESQLLWR EIHVDQAAEG DLPSNSGTES  180
SSTFELVNRQ FEVWKSLDQL AMDFDNSLRS QRIRDMKEGE AGRLLRYFQR QHIENPSFIH  240
SIQVDIDDKV SNIFWADDKM VVDYDHFGDV VCLDTSYRMN KDLQPFVQFI GVNHHNQAII  300
FAAALLFDDT VESLKWLFNT FLEAMSGKKP KVILTDQDAA IVEAINSILP ETSHRICVWQ  360
MYQNALKHLS LVVKDMESFS NDFRSCIYDY NNEEAFVHAW EGLLDKYGLQ QNDRLRWMFR  420
EREKWSIAYG RNTFFLDMKG SHVAEDLSNN LRSYLNSDQD ALQIYKIFER VADEQRFKET  480
HANDEMTRSM PRLLGNVALL KHASGIYTPK AFELFQKEYE KCLNVVVTQC NEKGFLLEYK  540
VSTFGQTQEY TVIFNSADDT VVCNCMKFEN VGFLCGHALK VLDNWNIKVV PSRYILKRWT  600
KDTRLGRVRD SGEFTAKENL KLAVASRYKD LCRNIIKISA RAAESEDAFQ FALRQLDELI  660
EGVEKILMLK AEEGQGITSS STVVNGFESE NAEFFLDEEE IEDQGEDNRV DGTKEKESAA  720
PDRHQLKNIN EKSCKKKRFQ LGQTPSPNTS SCISSPPQAR VMTEGQSHNP LLQVVQCMYQ  780
QQNPVMDHED NPNMYQQSVF YADQHVSPTQ IPLLQEPLIR SAYHESLTNN ALFRQLSTII  840
DNVSVTTDNM ILLYGKGQRY TMDFQLYNHK IIASRIAKEL GGADVAKKYL GQCIYAVETG  900
YNDYLNNYYG EGYNTSNIYT PEQFSQLLVQ TYEIQLERLY NEGARKVAVF GLIRIGCMPA  960
YKQIFGANES SCVDKLNHAA QLFNNELQKA LPKLNANLPG AKFTYINSYE IDSENYTDLG  1020
FKFTNKSCCD VPSDQIPCAA LTYPCLNRDE HVYWDGAHYT EARARIFAKR AYKRQFPVDA  1080
YPYDISELAK VPNDEADGCS TCGSKIL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G137500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024437515.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_024437516.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A3N7FYC1	0.0	A0A3N7FYC1_POPTR; Uncharacterized protein
STRING	POPTR_0012s13550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-110	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Potri.012G137500.1
Entrez Gene	7484397