PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 283aa MW: 29980.8 Da PI: 4.7164

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G134000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	5e-17	114	163	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykG+r + +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++aa+++l+g Potri.012G134000.1 114 PSYKGIRLR--SGKWVSEIREPRK---TTRVWLGTYPTPEMAAAAYDAAALALKG 163 579*976..5*****843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.00E-15	114	173	No hit	No description
Pfam	PF00847	4.4E-11	114	163	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.796	115	171	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-26	115	173	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-18	115	173	IPR016177	DNA-binding domain
SMART	SM00380	4.8E-28	115	177	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MANTNSNVPQ ADQSPPPQPS NPSIQVPDPP SSILLPILQD DQYAPHSTSS NKSPRLIPSP 60 AGSLGQPLTV RQDEYSPRFG FPGQPVSGRQ DDQSPRSNRS SGGSSTQPTS GRHPSYKGIR 120 LRSGKWVSEI REPRKTTRVW LGTYPTPEMA AAAYDAAALA LKGPDAPLNF PESILSYPIP 180 ASASSSDIRA AAASAASTRS PRPEAGPNPE RDRLETEGTS SSTTTADIQS GQEFIDEEEL 240 LNLPSLLVDM AGGMLVSPPR INTPSSDDSP GNSDAENLWS YH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-13	113	172	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G134000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB588754	0.0	AB588754.1 Populus nigra PncERF1 mRNA for AP2/ERF domain-containing protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318847.3	0.0	ethylene-responsive transcription factor ERF025
Swissprot	Q9FJ90	2e-51	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A2K1YD42	0.0	A0A2K1YD42_POPTR; Uncharacterized protein
STRING	POPTR_0012s13880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40290	2	2
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	3e-35	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.012G134000.1
Entrez Gene	7482152

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]