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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.012G133000.1 |
Common Name | POPTR_0012s13980g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MIKC_MADS |
Protein Properties |
Length: 215aa MW: 24638.4 Da PI: 9.2234 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.012G133000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.7 | 7.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqvtfskR+ng+lKKA+ELS+LCdaevaviifs++g+l+ ++s
Potri.012G133000.1 9 KRIENATSRQVTFSKRKNGLLKKAYELSILCDAEVAVIIFSQKGTLFKFAS 59
79**********************************************986 PP
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2 | K-box | 72.2 | 1.6e-24 | 83 | 173 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
e+ e+l+qe+a++ k+ie ++ qR+llG+dL+s+s +eL+ + +qLe sl++iR++K++l++eqie+lq ke+ l en +L+k+ +
Potri.012G133000.1 83 DVEQSKEQLRQESANMAKKIEIIEILQRKLLGQDLDSCSPEELHDIDNQLEISLSNIRARKTQLFKEQIEQLQAKERLLLMENARLTKQCD 173
44666889*******************************************************************************9976 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 2.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.006 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.81E-37 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 6.3E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-29 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.3E-24 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.899 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MARGKVQLKR IENATSRQVT FSKRKNGLLK KAYELSILCD AEVAVIIFSQ KGTLFKFASI 60 DQIQKTIDRY RKNAKQLHTD RIDVEQSKEQ LRQESANMAK KIEIIEILQR KLLGQDLDSC 120 SPEELHDIDN QLEISLSNIR ARKTQLFKEQ IEQLQAKERL LLMENARLTK QCDAQPLQQS 180 TQSNQVVSYL TSCSKSSDIV ETDLYIGLPH MRCL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Uniprot | TISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}. |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |