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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G132300.1 | ||||||||
Common Name | POPTR_0012s14050g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 995aa MW: 111294 Da PI: 7.1743 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 25.1 | 4.4e-08 | 229 | 283 | 21 | 75 |
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 + rgk ++ + +ev++++ ++ ++r +k+ kw+n+ ++++k+ e+e++ + e+ Potri.012G132300.1 229 STRGKTRADKDREVAEFLNRHDVHRDAKTAGTKWDNMLGEFRKVYEWERGDKREQ 283 56788999999**************************************974433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56112 | 1.46E-15 | 840 | 977 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:1.10.510.10 | 5.8E-6 | 844 | 939 | No hit | No description |
CDD | cd00180 | 3.16E-12 | 850 | 977 | No hit | No description |
Gene3D | G3DSA:1.10.510.10 | 0.001 | 946 | 984 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 995 aa Download sequence Send to blast |
MGENKGETTK KQQQQQLSSS TSPSPKGPIE ESTELRSLHH QQTTSAVVTG APFIPAPLFV 60 PIGATSSPFE QHFETVNPKR ARYSSAQWKL LPSASQQQQP PTQAQMATVV SSEATPSLIT 120 NPTQQKQPRT TAEASSSDTN SSPLRSPVPS LSAASAQETS KPEGEPHQHQ FRKGKYVSPV 180 WKPNEMLWLA RAWRFQYQGG SDLTSRVEQL PETTTGQVTS GDTAIAVQST RGKTRADKDR 240 EVAEFLNRHD VHRDAKTAGT KWDNMLGEFR KVYEWERGDK REQMGKSYFR LSPYERKAHR 300 LPASFDEEVF EELSQFMGPK MRTQSRGPSL SGSGDDSSRG TSLAAARALP PPPPFKEDDL 360 SLSGRTRQLV LTSGGEAYFH GTRGSLLGFD TAVDAAAGSS SSTKELRRIG KVRMTWEESV 420 SLWGEEGEHH RGRVRLQGSS FLNADELTFF DDSMVACTME AFEDGALKGF SVDKFVSGQQ 480 IKVFGRRKPS PSASVTPSGF TERVQLPLTE PSIRLPPWEF QDPTEYYVGC LRVPPTTLPS 540 LFELSWYLQE PPPEELRFPL RRDVYRDLPQ GKELFFTISN DPLDCRGITY DILSSIIRTN 600 PSISGATSSS RDSFIGVWDD CINRIVSKFC SVEVVIVRKQ PSSPMVDTLQ DEWPNVTGFV 660 RNFCLWRGEE TDQLREGQVD PSSSIIEKLL WTYLDLPYIL GYYAVGYSVT FCALCRSQDR 720 IIRTDLYSLD LSSPVERLKA LVPCYRVAGL LPLLADRCFN NFNNGGTYKQ LAFSDFERVD 780 MGNGNIMEMT PNTVTRLFSS RRKWAAVKEI YDCLDHRIPH AEFIYRSSEK DLALVFKPRG 840 LKFKPNNCEQ LVEALKYVTQ ALVALHDLSF MHRDLSWDKV MRRSDSENEW FLSGFDDAVG 900 APQLNPVHGI GEARGRHAPE MGRGMHGVKV DVWGVGHLVR TCGLGPNGVP KILRELQNRC 960 LDQNPEQRPT AADCYHHLLQ VQSSLQSSSP GVPY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G132300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318853.1 | 0.0 | uncharacterized protein LOC7482128 | ||||
TrEMBL | B9I4H2 | 0.0 | B9I4H2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s14050.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11857 | 28 | 31 |
Representative plant | OGRP9479 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 7e-07 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G132300.1 |
Entrez Gene | 7482128 |