PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G104900.1
Common NamePOPTR_0012s10670g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 360aa    MW: 40333.7 Da    PI: 7.9297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G104900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09182229455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Potri.012G104900.1 182 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 229
                         8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.44E-10176233No hitNo description
SuperFamilySSF474594.97E-17176245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-17178243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.675178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAAFSYQHPP LFLDSVILPN ITTPIMNMNN SMYWFYDEAG GINSNSFYQV YPPETFHEAP  60
LDVRFHEFSH HDHSSKVSLS DNETSLTKKQ STGSSTVVDK LETGEQVTQE VTPVDRKRKT  120
TNGSLNSAQS KDVKEVKSKR QKKCRGDMKQ EEKRPKAVKK VPEEPPTGYV HVRARRGQAT  180
DSHSLAERVR REKISERMKM LQRLVPGCDK VTGKALMLDE IINYVQSLQN QVEFLSMKLA  240
SVNPMFYDFG MELDAFMVRP ERLSSMSPPL PSLQQCSPIQ PTAFADAAAA ATTTATPTTS  300
FATANNYPLI DNSTSLLLQG MRPSAFTTED SCNLMWDVDE RRQKFLSPSG LTSNLCSFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115141RKRKTTNGSLNSAQSKDVKEVKSKRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G104900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3918265e-76FQ391826.1 Vitis vinifera clone SS0AFA9YF22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438030.10.0transcription factor bHLH137
TrEMBLB9I3Y00.0B9I3Y0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-54bHLH family protein