PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G100700.1 | ||||||||
Common Name | POPTR_0012s10260g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 347aa MW: 38302.6 Da PI: 8.3604 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.1 | 4.7e-42 | 109 | 186 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Potri.012G100700.1 109 MCLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 186 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.7E-35 | 103 | 171 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.983 | 107 | 184 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-39 | 108 | 189 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.7E-31 | 110 | 183 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGGWKDQTRS SSSEHFMDWN LKATSWDLTE FEQGAVPSIC IDAFGRPTNF GANRTGGGFS 60 IDLKLGRVGN SSDESMVNWK QPGVSKLESS PSGSTKRARG ANNGTQVAMC LVDGCNSDLS 120 TCRDYHRRHK VCELHSKTPQ VTIGGQKQRF CQQCSRFHSL EEFDEGKRSC RKRLDGHNRR 180 RRKPQPDPFS HPPSFLPNHQ GTQIFPFSSS HVYHSTAVVN STWSGVANTE ADGGHYNLHQ 240 LPDKQNLFLG SSSNSYKGGK LFPFLQCDNP CLNNQTSEAS VCLPLPRAIA FPGSSGASSH 300 SMFCDRLATQ VQDSDCALSL FCHQHRRMHG ETPCCNDITQ SPFRIP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-29 | 100 | 183 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 183 | KRSCRKRLDGHNRRRRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G100700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322273.3 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441807.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441808.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_024441809.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A0S2GL11 | 0.0 | A0A0S2GL11_POPTO; Uncharacterized protein | ||||
STRING | POPTR_0012s10260.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 8e-71 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G100700.1 |
Entrez Gene | 7454573 |