PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G093200.1
Common NamePOPTR_0012s09470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 290aa    MW: 32169.3 Da    PI: 8.8458
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G093200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55e-18451221699
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         l++p kfa   ++   ++++  led+sg++W+vk+  +   +++vl++GW+ F++++gL+ gDf++F ++  s f   v++++k
  Potri.012G093200.1  45 LYFPPKFAPMVSSL--NGQETFLEDSSGQRWKVKV--SILNDSFVLQEGWSAFASDHGLELGDFIIFNYIMGSHF--EVHIYDK 122
                         88999999777443..45689**************..666666**************************977888..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-2230125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-2130125IPR015300DNA-binding pseudobarrel domain
CDDcd100178.38E-2131121No hitNo description
SMARTSM010195.9E-932123IPR003340B3 DNA binding domain
PfamPF023621.3E-1545122IPR003340B3 DNA binding domain
PROSITE profilePS5086313.3845123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTSKEEACPM CTQNCLMTHG NRTNSRTLVS SFFKVLIGGP FLTVLYFPPK FAPMVSSLNG  60
QETFLEDSSG QRWKVKVSIL NDSFVLQEGW SAFASDHGLE LGDFIIFNYI MGSHFEVHIY  120
DKSACERLDF SERRNQKERT GNNTQNFNTE YGQCLAKDKG SMNVHGSSTP NLAGEEICRG  180
QSKLKNDVLK AKMVAKNTST NKKETRAEKI VSKAECVEES RDMINRELGK KHEDYGETLV  240
DLSNWGLSKA NLGIEGSKKT RAGTKKLSHH AGASFKSQKE AGLGSKDTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G093200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318699.10.0B3 domain-containing protein Os02g0598200
RefseqXP_024438004.10.0B3 domain-containing protein Os02g0598200
RefseqXP_024438005.10.0B3 domain-containing protein Os02g0598200
TrEMBLB9I3L40.0B9I3L4_POPTR; Uncharacterized protein
STRINGPOPTR_0012s09470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-12B3 family protein