PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G092500.2
Common NamePOPTR_0012s09400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 475aa    MW: 52868.5 Da    PI: 5.4751
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G092500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.12.9e-13130152426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C f+++tGtCk+G++CkF+H+
  Potri.012G092500.2 130 EDCAFYMKTGTCKFGANCKFNHP 152
                         89********************9 PP
2zf-CCCH33.95.2e-11178200527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C+++++tG CkyG  C+F+H++
  Potri.012G092500.2 178 ECKYYLKTGGCKYGTACRFNHSR 200
                         6********************95 PP
3zf-CCCH36.48.7e-12229252326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C +f+r+G Ck+G++Ck++H+
  Potri.012G092500.2 229 EKECEYFMRNGSCKFGANCKYNHP 252
                         689********************9 PP
4zf-CCCH23.68.9e-08364389227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C+f++++G Ck+ ++Ck++H++
  Potri.012G092500.2 364 GQPQCSFYMKFGDCKFKSNCKYHHPK 389
                         7899********************96 PP
5zf-CCCH35.61.5e-11411434326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + +C++++r+G+Ck+G++CkF H+
  Potri.012G092500.2 411 QNICSHYSRYGICKFGPSCKFDHS 434
                         679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6125154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009126154IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7126153IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10130152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5132151IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089173201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6177204IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8178200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-6179200IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6226253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15226254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6227253IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9229252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4232251IPR000571Zinc finger, CCCH-type
SMARTSM003560.027362389IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173362390IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-5364389IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5366391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6406434IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5408435IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887408436IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-9411434IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5413435IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDQQIESPIP IIHKEIPQLG FQSFSSSPRF PSTPSDPDQT ALDDDNHLHQ ELQNQLDLKE  60
GSLNSNDSHE EEEEEEEEFK SDKKIEFFYE SIEKVGDGGD DLENKNERSN DIENNNSSGY  120
HQYPVRPEAE DCAFYMKTGT CKFGANCKFN HPLRRKNQTV KEKTKEREEA TEKPSLIECK  180
YYLKTGGCKY GTACRFNHSR AKYSVPPVKI PMSPALELNF LGLPIRLGEK ECEYFMRNGS  240
CKFGANCKYN HPDPTAVGGS DHPSTFLNGG SASLPVPSSS SVGSWSSPRA LNDPTSFVPI  300
MFSPNQGVPP QSPDWNGYQA PLYPPERSLH PPLSYALINI ATESNVYAPQ QQQIVVDEFP  360
ERPGQPQCSF YMKFGDCKFK SNCKYHHPKN RISKSPPLTL SDKGLPLRPD QNICSHYSRY  420
GICKFGPSCK FDHSIQPASS IGSSDDQNTA FGNSVTQEAA RMAESGNGSD TAVE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.99410.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G092500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2231650.0CU223165.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438164.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ9STM41e-133C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2I4KKM10.0A0A2I4KKM1_POPTR; C3H family protein
STRINGPOPTR_0012s09400.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-123C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]