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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.012G087100.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
TALE |
| Protein Properties |
Length: 341aa MW: 37951.3 Da PI: 4.7081 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G087100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 28.8 | 2.2e-09 | 283 | 317 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
k +yp+++++ LA+++gL+++q+ +WF N+R ++
Potri.012G087100.1 283 KWPYPTEADKVALAESTGLDQKQINNWFINQRKRH 317
569*****************************885 PP
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| 2 | ELK | 30.7 | 6.9e-11 | 237 | 258 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK+ LlrKYsgy+++Lk+ Fs
Potri.012G087100.1 237 ELKDKLLRKYSGYISTLKHAFS 258
9*****************8665 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MMEELYGLQS TSSDYSLQVP SENMVSPVAN YYHPVGFTSP AGEPSFPVFG SEQMFCGSSV 60
SDAASMGAEL HQKQQQQSGG VGVGDHSNRN NSEEVSCAIR AKIASHPLYP KLLEAYIDCQ 120
KVGAPPEMAY LLDEIRLVND VSKGSNDTVA SCLGADPELD EFMETYCDVL MKYKADLSRP 180
FDEATTFLND IEAQFNTLCN GPSRSQVYDE AAGSSDEDAS GGEAGMQDST RINEDRELKD 240
KLLRKYSGYI STLKHAFSKQ KKKGKLPKEA RQILLNWWNI HNKWPYPTEA DKVALAESTG 300
LDQKQINNWF INQRKRHWKP SENMQFAVVD SLYGPFFMND *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}. |
| Uniprot | TISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
