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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G082000.1 | ||||||||
Common Name | POPTR_0012s08360g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 448aa MW: 50227.3 Da PI: 7.1045 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.4e-18 | 196 | 242 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEd ll+++v+q+G + W+ +a+++ gR +kqc++rw+++l Potri.012G082000.1 196 KGQWTTEEDRLLIHLVEQHGVRKWSDVAKMLS-GRIGKQCRERWHNHL 242 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.5e-18 | 248 | 290 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W+ eEd++l++a+ lG++ W+ Ia++++ gRt++++k++w+ Potri.012G082000.1 248 KDAWSVEEDKILIQAHSVLGNR-WAEIAKRLP-GRTENSIKNHWN 290 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.87 | 191 | 246 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-31 | 194 | 289 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 195 | 244 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-17 | 196 | 242 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-27 | 197 | 249 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.77E-15 | 199 | 242 | No hit | No description |
PROSITE profile | PS51294 | 21.953 | 247 | 297 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-17 | 247 | 295 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 248 | 290 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 250 | 295 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.28E-13 | 250 | 293 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MELDNNVKKE KPVSQPMFLS SKACIEEEYF PFETPCPSSK GFLQGFSHLD DHGNANGSSS 60 NPLFGVQTGS NFDSFDAFPY GPSSNIDLYD YECKPFAGNI NGGGGHGQVN DSFQSGGYSN 120 LSSQRNSIDE IGSNQGYTSL SFEEAKPVSF VVQDEVSCVG TAENECKNKM GLNMTRTLQP 180 FARKTWKGRK KNSVVKGQWT TEEDRLLIHL VEQHGVRKWS DVAKMLSGRI GKQCRERWHN 240 HLRPDIKKDA WSVEEDKILI QAHSVLGNRW AEIAKRLPGR TENSIKNHWN ATKRKQYSKR 300 KCRPKYPRAS LLQDYIKSLN LNSGTTWKDH GITTASTAAD VIPDNTANMK APEQQPRDLV 360 LFKDNDGGLV PCYSFSEVPD FDNIQEKMFQ GGCSVDSILD GLPCDHSSVH EKRLQMKVPE 420 QDYATPFMGF EVKKEVDLVE MISQSKM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-45 | 194 | 296 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 7e-45 | 194 | 296 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G082000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318055.2 | 0.0 | transcription factor MYB98 | ||||
TrEMBL | A0A2K1YAQ8 | 0.0 | A0A2K1YAQ8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s08360.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 6e-87 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G082000.1 |
Entrez Gene | 7456894 |