 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.012G073900.1 |
| Common Name | POPTR_0012s07560g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MYB_related |
| Protein Properties |
Length: 314aa MW: 34157.1 Da PI: 9.1694 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G073900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 43.7 | 6.4e-14 | 96 | 141 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++WT+eE+++++ + +++G+g+W+ I+r + +Rt q+ s+ qk+
Potri.012G073900.1 96 LPWTEEEHKRFLVGLQKMGKGDWRGISRNFVRTRTSTQVASHAQKH 141
69******************************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006338 | Biological Process | chromatin remodeling |
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0035066 | Biological Process | positive regulation of histone acetylation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003713 | Molecular Function | transcription coactivator activity |
| GO:0004402 | Molecular Function | histone acetyltransferase activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MVAGSSSTGS GVEGAAETRP KEILLFGVRV VVDNMRKIVS LNNMNDYEHL NDNEEDEEAA 60
AGASASAAVS GYMSADDTVQ HSSSASERRS QRKRGLPWTE EEHKRFLVGL QKMGKGDWRG 120
ISRNFVRTRT STQVASHAQK HFLRNSNVNR RRRRSSLFDI TTDMVTETPM EEQQALCQDS 180
KSNNQAPKSN PPLQANSTTS FPGVLPFPIR RRTVSPAVSP LQIESPIMEN RSLGQGNQSL 240
NYSTNLVLTV PVVPAPCTSV MPDLNLNLKP VADSSPLSLD LSSSSDQRAS SSRHSAFQTM 300
SSLKNGDNII VVA*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC216684 | 0.0 | AC216684.1 Populus trichocarpa clone POP030-A02, complete sequence. |
