PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G072700.1
Common NamePOPTR_0012s07470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 273aa    MW: 29838.2 Da    PI: 6.3731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G072700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09153200455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR+ri +++  L++l+P +    +k   Ka  L + ++YI+sLq
  Potri.012G072700.1 153 SHSLAERARRERIGERMKILQDLVPGC----NKVIGKALALDEIINYIQSLQ 200
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17146217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-7147204No hitNo description
Gene3DG3DSA:4.10.280.109.1E-16149218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.888149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-7153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-7155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDPPLINEKS FSAANPSSYS LTEIWPFPPP SSTALGLRMA NLADRDGSVD ESTVTEQRGG  60
NRNGNRKARD LSSEEDDSSI MVSTTTSAHD LNDLNGKRRK ISGSRNENND SRAEIEASSA  120
ANNKPAEPSS KPSEPPMQDY IHVRSRRGQA TDSHSLAERA RRERIGERMK ILQDLVPGCN  180
KVIGKALALD EIINYIQSLQ CQVEFLSMKL EAVNSRMSTS PAIEGLHPKD LGAQPFDATG  240
MIFGPQPTRD YVQGSQPEWL HMQVGGSFKR AT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.115250.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G072700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318005.10.0transcription factor bHLH79 isoform X1
SwissprotQ9LV174e-86BH079_ARATH; Transcription factor bHLH79
TrEMBLB9I3300.0B9I330_POPTR; Uncharacterized protein
STRINGPOPTR_0012s07470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.12e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]