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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.012G062300.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 245aa MW: 28389.4 Da PI: 9.2681 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G062300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 96.3 | 1.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
Potri.012G062300.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59
79***********************************************86 PP
|
| 2 | K-box | 112.7 | 3.8e-37 | 85 | 175 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+ +++ s++ e+akLk++++ Lqr+qRh++GedL+sL++keLq+Le+q++++lk++Rs+Kn+l++e+i+elqkk k+lqe+n++L kk++e
Potri.012G062300.1 85 DPENHGSWTLEYAKLKARVDVLQRNQRHFMGEDLDSLNIKELQNLEHQIDSALKHVRSRKNQLMYESISELQKKDKALQEQNNMLAKKVKE 175
557899**********************************************************************************986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 32.73 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.58E-43 | 2 | 79 | No hit | No description |
| SuperFamily | SSF55455 | 8.89E-34 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.3E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.3E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.3E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.5E-30 | 88 | 173 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 17.308 | 89 | 179 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
| GO:0010154 | Biological Process | fruit development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MGRGRIQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYATD 60
SCMERILERY ERYSYAERQL LANDDPENHG SWTLEYAKLK ARVDVLQRNQ RHFMGEDLDS 120
LNIKELQNLE HQIDSALKHV RSRKNQLMYE SISELQKKDK ALQEQNNMLA KKVKEKEKAI 180
IAQQASWEQQ NPDLDSPTIL RPQPMQPLNI SSSHLATGIE EEPAPIQHRA NALLPAWMLR 240
YLNE*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-22 | 1 | 74 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Publications
? help Back to Top |
- Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Ralph SG, et al.
Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
BMC Genomics, 2008. 9: p. 57
[PMID:18230180] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751]
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