 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.012G056800.1 |
| Common Name | POPTR_0012s05340g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
LBD |
| Protein Properties |
Length: 274aa MW: 30191.2 Da PI: 6.7616 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G056800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 92.9 | 3.7e-29 | 46 | 150 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+C++C++lr++C ++C + p++ p++q++++ +++k++G++ +++l++a p++ r+d+++sl+yeA+ r+ +Pv+G+vg+++++++q
Potri.012G056800.1 46 SCNGCRILRKGCGDNCSIKPCLqwietPDSQSNATLFLAKFYGRAGLMNLINACPQHLRPDTFKSLLYEACGRIVNPVSGSVGLLSTGSWQ 136
6****************************************************************************************** PP
DUF260 87 leqlkaelallkee 100
+q+++e++l +e+
Potri.012G056800.1 137 QCQAAVEAVLKGEP 150
*******9988765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MPFSALSFSS LPHRIILLLI GFLNSSPSLS RHFSISFRTE YTMRMSCNGC RILRKGCGDN 60
CSIKPCLQWI ETPDSQSNAT LFLAKFYGRA GLMNLINACP QHLRPDTFKS LLYEACGRIV 120
NPVSGSVGLL STGSWQQCQA AVEAVLKGEP ITQIASTDQL TLGASDMRHV SREEDWSASD 180
QPRKIKSKRQ FNRSTSKRKP SRTEAEHTCF EFMIGFDGLR SVSPDSVLSW RPTLGSDNEE 240
TDSIGSVETV EASKLDEPAE GSDLDLDLTL GHY*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
