PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G056800.1
Common NamePOPTR_0012s05340g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 274aa    MW: 30191.2 Da    PI: 6.7616
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G056800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.7e-29461501100
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C++lr++C ++C + p++     p++q++++ +++k++G++ +++l++a p++ r+d+++sl+yeA+ r+ +Pv+G+vg+++++++q
  Potri.012G056800.1  46 SCNGCRILRKGCGDNCSIKPCLqwietPDSQSNATLFLAKFYGRAGLMNLINACPQHLRPDTFKSLLYEACGRIVNPVSGSVGLLSTGSWQ 136
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallkee 100
                          +q+++e++l +e+
  Potri.012G056800.1 137 QCQAAVEAVLKGEP 150
                         *******9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.77645151IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-2446145IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPFSALSFSS LPHRIILLLI GFLNSSPSLS RHFSISFRTE YTMRMSCNGC RILRKGCGDN  60
CSIKPCLQWI ETPDSQSNAT LFLAKFYGRA GLMNLINACP QHLRPDTFKS LLYEACGRIV  120
NPVSGSVGLL STGSWQQCQA AVEAVLKGEP ITQIASTDQL TLGASDMRHV SREEDWSASD  180
QPRKIKSKRQ FNRSTSKRKP SRTEAEHTCF EFMIGFDGLR SVSPDSVLSW RPTLGSDNEE  240
TDSIGSVETV EASKLDEPAE GSDLDLDLTL GHY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.12410.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G056800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317916.30.0LOB domain-containing protein 40
SwissprotQ9M8861e-65LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2K1Y9E00.0A0A2K1Y9E0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-60LOB domain-containing protein 41