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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.012G055600.1 | ||||||||
Common Name | POPTR_0012s05200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 328aa MW: 37246 Da PI: 7.6179 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.6e-19 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llv++++++G g+W++ a++ g++Rt+k+c++rw++yl Potri.012G055600.1 24 RGPWTLEEDTLLVHYIARHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 71 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 6.8e-17 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Potri.012G055600.1 77 RGNLTPQEQLLILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.309 | 19 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.7E-31 | 22 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-16 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.17E-12 | 26 | 71 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 39 | 48 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
SMART | SM00717 | 4.7E-15 | 76 | 124 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.646 | 76 | 126 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-15 | 77 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 79 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.56E-12 | 81 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MRVDIMSSSK KTTSSKEDDA ELRRGPWTLE EDTLLVHYIA RHGEGRWNLL AKRAGLRRTG 60 KSCRLRWLNY LKPDVKRGNL TPQEQLLILD LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT 120 RVQKQARHLR IDANSTAFQD IIRRSWMPRL LQKIGGSSTS SSAMTCQSPA VSQLIPNYAP 180 QLSAFPTALP PPQQQEAPLD MSVMMHCMEH REQTSDSEHG TSSCISSAES MNVSQMSHLS 240 EYPKSPFQAM GNNGDYSTLV KDCYYVDSNF YDMEAINLAT MSVPGELGIS AVDRHMGDGD 300 WAGYDFGDTV WNMDELWQFR NLQGKEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 21 | 125 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.012G055600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002318546.1 | 0.0 | transcription factor MYB62 | ||||
TrEMBL | B9I2L1 | 0.0 | B9I2L1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s05200.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 8e-81 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Phytozome | Potri.012G055600.1 |
Entrez Gene | 7487068 |