PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.012G019600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 217aa    MW: 24431.8 Da    PI: 4.5324
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.012G019600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-1010342348
                        -HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                        +W+ Ia++++ gRt++++k++w++yl
  Potri.012G019600.1 10 RWSQIAQHLP-GRTDNEIKNHWHSYL 34
                        4*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.548138IPR017930Myb domain
SuperFamilySSF466891.17E-9942IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-13935IPR009057Homeodomain-like
CDDcd001672.51E-71034No hitNo description
PfamPF002491.8E-81034IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
METICFKLTR WSQIAQHLPG RTDNEIKNHW HSYLKKKFLK DEGMESLKRT QSDSSNSDIM  60
ELSPSPKRLK MQASSLESSM STEKPSADIN RDVESPKEPK GSSLAPKVTF AEWLSLDSFE  120
SLGEPMDSNS TFDHNASFQD NFMRDYLLDE RVFGGEYHNS LSHGSSGDIF SSEFKFESQS  180
PGNEFDFSSG EDLCGDFNLS KITCEGLVSK SNYEEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449ESLKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.012G019600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438505.11e-131protein ODORANT1-like
TrEMBLA0A2K1Y7K71e-157A0A2K1Y7K7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13190.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.17e-16myb domain protein 19