 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.012G001400.3 |
| Common Name | POPTR_0012s01610g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
NAC |
| Protein Properties |
Length: 260aa MW: 29609.5 Da PI: 9.4904 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.012G001400.3 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 182.2 | 1.3e-56 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeel+++yL kkv + ++++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke
Potri.012G001400.3 17 LPPGFRFHPTDEELISHYLYKKVLDINFSA-RAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKE 106
79**************************99.89***************888999************************************* PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle
Potri.012G001400.3 107 IYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 143
***.999*****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MENISGLGKE DDDKMDLPPG FRFHPTDEEL ISHYLYKKVL DINFSARAIG DVDLNKSEPW 60
ELPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL 120
VFYKGRAPKG EKTNWVMHEY RLEGKFSAHN LPKTAKNEWV ICRVFQKSSA GKKTYISGLV 180
RLGSFGNEFS PYGLPPLTDS SPSNGKIRPV AESAYVPCFS NLSDDQRNQQ DTTDSFNNHL 240
FAVSSNPSEV LFQFKTAQF*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-56 | 5 | 173 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-56 | 5 | 173 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-56 | 5 | 173 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-56 | 5 | 173 | 2 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-56 | 5 | 173 | 2 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-56 | 5 | 173 | 2 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
