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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.011G167600.1 |
Common Name | POPTR_0011s17060g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 328aa MW: 36207.7 Da PI: 7.2254 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.011G167600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 59.1 | 9.7e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg WT+eEd +l +++q+G+++W++I++ g+ R++k+c++rw +yl
Potri.011G167600.1 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
89********************************************97 PP
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2 | Myb_DNA-binding | 44.1 | 4.8e-14 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g ++ E+ +v+++ G++ W++Ia+ ++ gRt++++k++w++
Potri.011G167600.1 68 GQFSDAEEHTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
7899*****************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY 60 LRPDLKHGQF SDAEEHTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKRKLSGMG 120 IDPVTHKPFS HLMAEIATTL ATPQVANLAE AALGCFKDEM LHLLTKKRID FQLLQCNTNG 180 VQGNTSSPYI ATKHDENDDT IERIKLGFSR AMQEPGILPP NKTWDSTGAT SANFAGTCAY 240 FPSSVNAFLC GPSSFGNEVA LSPWSQSMCT GSTCTAGDQQ GRLHEKLDDE NGEESQGGKE 300 IRNGSSLFNT DCVLWDLPSD DLMNSIV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing anthers during meiosis and young microspore stages. {ECO:0000269|PubMed:16141453}. |
Functional Description ? help
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Source |
Description |
UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |