PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G157700.1
Common NamePOPTR_0011s16100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 299aa    MW: 33662 Da    PI: 4.5473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G157700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.3e-05174218655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +++ r RR++i ++  eL + +P         K++ ae+ + A +Y+k Lq
  Potri.011G157700.1 174 SIAARERRRKITEKTRELGKFIPGgH------KMNTAEMFQAASKYVKFLQ 218
                         67889******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.484168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-7171221No hitNo description
Gene3DG3DSA:4.10.280.101.2E-8172223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-9172226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-6174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MALSFCSNLG SSLQHHNLQE LTEYPQGDIE IGNDQLFACN DNMMFSDAFI NPLYEVEEQL  60
VYSDSYTDLL PYFSSPSDNI ISLSPEIFPL QDFESYHYPK RPKTYTDHFN STFEPNFFEG  120
YAPNPNPGLP ELFPEIPTPE PKFQVPITFN VGRTDQSVMN SKKPSTGVSL STQSIAARER  180
RRKITEKTRE LGKFIPGGHK MNTAEMFQAA SKYVKFLQAQ IGILELMGST QENKGPMHTQ  240
ELQTLLVTSP AIQEKLYSEE KCLVPRDFVQ TIANDCQIQS KPLVIEEIDQ LLGGQLLG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G157700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317694.10.0transcription factor bHLH52
SwissprotQ84RD03e-36BH053_ARATH; Transcription factor bHLH53
TrEMBLB9I0X70.0B9I0X7_POPTR; Uncharacterized protein
STRINGPOPTR_0011s16100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.19e-36bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]