 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.011G154800.5 |
| Common Name | POPTR_0011s15810g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
LSD |
| Protein Properties |
Length: 164aa MW: 17314.1 Da PI: 8.5444 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.011G154800.5 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 36.2 | 9.7e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C gCr lL YP GA++V+CalC tV
Potri.011G154800.5 7 CRGCRSLLLYPSGATNVCCALCSTV 31
9**********************99 PP
|
| 2 | zf-LSD1 | 39.2 | 1.2e-12 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C gCrtlL+Y rGA+ VRC++C+ V
Potri.011G154800.5 46 CRGCRTLLMYARGATTVRCSCCHIV 70
9**********************98 PP
|
| 3 | zf-LSD1 | 44.6 | 2.4e-14 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+C+t+L+YP GApsV+Ca+C+ V
Potri.011G154800.5 84 CGNCQTTLMYPNGAPSVKCAVCHYV 108
**********************987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000303 | Biological Process | response to superoxide |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0002240 | Biological Process | response to molecule of oomycetes origin |
| GO:0009626 | Biological Process | plant-type hypersensitive response |
| GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
| GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
| GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
| GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
| GO:0010618 | Biological Process | aerenchyma formation |
| GO:0043069 | Biological Process | negative regulation of programmed cell death |
| Sequence ? help Back to Top |
| Protein Sequence Length: 164 aa
Download sequence Send
to blast |
MQSQVVCRGC RSLLLYPSGA TNVCCALCST VTSIPAPGMD LAQLICRGCR TLLMYARGAT 60
TVRCSCCHIV NFAPGPNQVA HVNCGNCQTT LMYPNGAPSV KCAVCHYVTN ISTANVRVPL 120
PANRPSGIGG TMPSTSTVSN WTYFSFLVEN ATKNLGYFVS NAY*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC182684 | 2e-36 | AC182684.2 Populus trichocarpa clone Pop1-37C15, complete sequence. |
