 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.011G147400.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
Trihelix |
Protein Properties |
Length: 590aa MW: 63913.8 Da PI: 7.8591 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.011G147400.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 96.7 | 2.1e-30 | 100 | 184 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe++aL+++r+em+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea
Potri.011G147400.1 100 RWPRQETHALLQIRSEMDAAFRDATLKGPLWEDVSRKLAEMGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTQLEA 184
8*********************************************************************866665..*******85 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 590 aa
Download sequence Send
to blast |
MQQGGGERGS SQSQYGVPHQ QEGDVPITTP TSAALATHMQ QQVVEEASPI SSRPPATAAT 60 TSGVMNLDEF IRLSGSGGAE EDIVAGEDAD RTGGIASGNR WPRQETHALL QIRSEMDAAF 120 RDATLKGPLW EDVSRKLAEM GYKRNAKKCK EKFENVHKYY KRTKEGRAGR QDGKSYRFFT 180 QLEALHNTTG SGGASASVIN MSGAAPQQIF TTTTSSLDVA PVSVGIPMPI SSSVRIPPPS 240 SRVLQPASNI GSMFPPDLGA TVAAAAAGAG PVGISFSSNG SSSSPSSEDD DDDEEEDEEL 300 LGGQPSATAA GTSRKRKRAS LSSAKGETHR MMEFFEGLMK QLMQKQEAMQ QRFLEAIEKR 360 EQDRMIRDEA WKRQEMARLS REHEIMAQER AISASRDAAI VAFLQKITGQ TIHLPTPVSM 420 APPFSLPPPP PPPEPQPVQV TPLFTVSTQP PPPPQLQPMP QSQVTPQQNI QQPQPLPQQQ 480 HHHHQQGHRQ HQLPISSDIV MAVPEQQIIP QEIGSGGGSG SEPASSRWPK PEVLALIKLR 540 SGLETKYQEA GPKGPLWKKF QQECKGWAIK EVPKDAKKNG RISTSTSRK*
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 142 | 150 | KRNAKKCKE |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC149430 | 0.0 | AC149430.1 Populus trichocarpa clone Pop1-116F13, complete sequence. |