PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G145800.1
Common NamePOPTR_0011s14880g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 808aa    MW: 92308.2 Da    PI: 6.7659
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G145800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.14.6e-31101193291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r +++k    +++ +r+raetr+gCka+l+vk +++g+w+v+ ++ eHnHel
  Potri.011G145800.1 101 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRIDKDKParsDVRVKRPRAETRVGCKAMLVVKIQDSGRWVVSAFVREHNHEL 191
                         9***************************************999988777889999************************************ PP

                FAR1  90 ap 91 
                         +p
  Potri.011G145800.1 192 VP 193
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-29101193IPR004330FAR1 DNA binding domain
PfamPF105517.6E-32314406IPR018289MULE transposase domain
PfamPF044342.5E-11582628IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.152594630IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-8605632IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MIMELEPLTM GNEVIEFDMM GLGDDTVDDI QHQSVDVGVD EVEEEEGGDG EVEGNHFLLN  60
FYDPQSSDNS ISGQVYIPQG DTNLEPYDGM EFESEEAAKA FYNSYARRVG FSTRVSMSRR  120
SRRDGAIIQR SFVCAKEGFR IDKDKPARSD VRVKRPRAET RVGCKAMLVV KIQDSGRWVV  180
SAFVREHNHE LVPPDKVHCL RSHRHVSGSA KSLIDTLQGA GIGPSGIMSA LIKEYGGISN  240
VGFTERDCRN YMRSSRQRTL GGDTQHLLDY LRNKQAENSA FFYAVQGDED QCMSNIFWAD  300
AKARANYTYF GDTVTFDTTY RSNRYRLPFA PFTGVNHHGQ PVLFGCALLV NESEASFLWL  360
FKTWLMAMSE RPPVSITTDH DRVICLAVNQ VFPETRHRIC KWHIFKEFQE KLSHVLSEHP  420
NFEAELHKCV NLTDSVEEFE SCWLSLLNRY NLREHEWLQA VYTDRRQWVP AYLRDTFFAE  480
MSITQRSDSI NSYFDGYINA STTLQLFVKQ YEKALESRYE KEVKADYDSI NTAPVLKTPS  540
PMEKQVAELY SRKLFLKFQE ELVETLTFLA TKVVDDGAIT TYRVAKFGEN HKAYTVSFNV  600
REMKASCSCL MFEFSGLLCR HILTVFRVTN VLTLPSHYVL KRWTRNAKSG VILEEHASDF  660
LGSSRESLTF RYSNLRHEAL KYVDNGIQSL EIYNVSMDAL QEAANKVALA RKNGGKVAIA  720
NRAGREEYPP QGSQANNNNQ NQQQGLEQPA SGDDQDKKIQ KLHRKLDRAR RKCEVYRANL  780
LSVLKDIEEQ KLQLSIKVQN IKLGMKD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G145800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377868.20.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_024437102.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K1YKC90.0A0A2K1YKC9_POPTR; Uncharacterized protein
STRINGPOPTR_0011s14880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]