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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.011G125900.1 |
Common Name | POPTR_0011s12750g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 352aa MW: 39494.3 Da PI: 7.0887 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.011G125900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ +++++G g+W+ ++ g++R++k+c++rw +yl
Potri.011G125900.1 14 KGPWTAEEDQKLITYIQKHGHGRWRILPKNAGLKRCGKSCRLRWTNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 54.9 | 2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++ eE+e +++++ lG++ W+tIa +++ gRt++++k++w+++
Potri.011G125900.1 67 RGKFSDEEEETIIQLHGILGNK-WSTIATRLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MGKSPSCDKN GLKKGPWTAE EDQKLITYIQ KHGHGRWRIL PKNAGLKRCG KSCRLRWTNY 60 LRPDIKRGKF SDEEEETIIQ LHGILGNKWS TIATRLPGRT DNEIKNYWNT HIKKRLLMMG 120 IDPATHKPRL DLLQHCSALS SCLHNSSQLS IPSLLGMGPI LNPNLLNLAT SFLSCQGNIS 180 QDVSPRHFHE SQRRNNQVND QFQCLQPNEL QNQAQACTNT SGAQSLNETQ ISEANLEQLI 240 SSDPTNFSCQ NSLQSSWHTI EETPNVSESL MSNYVYHDCN NKPIIINDNS FETLPSLSFG 300 SLLSTPSYNT TPLHSSSTTY VNVSDEDEKN IYCSDMLSFD IPSCLDGNRL V*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC216449 | 0.0 | AC216449.1 Populus trichocarpa clone POP006-O09, complete sequence. |