PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G091900.1
Common NamePOPTR_0011s09450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 915aa    MW: 101170 Da    PI: 6.6179
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G091900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.93.9e-23127228199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Potri.011G091900.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI- 214
                         99*****************************8544444..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l++++ r+
  Potri.011G091900.1 215 -WNEKNQLLLGIKRA 228
                         .88888899998775 PP
2Auxin_resp115.16.2e-38253336183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld  rWpnS Wrs+k
  Potri.011G091900.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYLKAVYyTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDVARWPNSLWRSVK 336
                         79*********************************989*******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-40120242IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-21126219No hitNo description
PROSITE profilePS5086312.308127229IPR003340B3 DNA binding domain
PfamPF023622.5E-21127228IPR003340B3 DNA binding domain
SMARTSM010194.3E-23127229IPR003340B3 DNA binding domain
PfamPF065075.7E-33253336IPR010525Auxin response factor
SuperFamilySSF542772.16E-5773853No hitNo description
PfamPF023093.8E-6775867IPR033389AUX/IAA domain
PROSITE profilePS5174521.881778862IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MRHSSASFNP QTQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFAQGHS EQVAASTNKE  60
VDARIPNYPS LPPQLICQLH NVTMHADVET DEVYAQLTLQ PLSPQEQKDA YLPADLGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLIAGDS VLFIWNEKNQ LLLGIKRATR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYLKAVYYT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDVARWPNS LWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWTPG LHSFHGKLLY TILRALMDGI KDDDLGMNSS LMWLRGDGDR  420
GIQSLNLQGM GVAPWMQPRV DTSMLGLQND VYQTMATAAF QEMRALDPSK SSAASLLQFQ  480
QHQNLPIRNA ALMQPLMLQQ SPSQQAFLQG VQENKHQSQP QSQTPTRSHL IHQLQHQHSL  540
DSPEQQQPLL QQQHLADQQI PNVVSAISQY ASATQSLTPP LQAISLCQQH SFSDSNGNLV  600
TSPVVSPLQS LLGSFPQDET SHLFNFPRTN PLTTSSGWPS KRAAVDPLIS SVAPQCMMSQ  660
VEQLGPPQTS ISPSSVSLLP FPGRECPTEQ DGGTDPQSHL LFGVSIEPSS LLMQNGLSSL  720
RGVGSDSDST TVPFSSNYMS IAGTNFSLNP AMAPSSCIDE SGFLQSMENV GQGNPPSRTF  780
VKVYKSGSFG RSLDITKFSN YNELRSELAF MFGLEGQLED PLRSGWQLVF IDRENDVLLL  840
GDGPWPEFVN SVWCIKILSP QEVQQMGKRG LELLNSVPIQ RLSNGSCDDY VNRQDSQNLS  900
NAITSVGSLD CREI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601135741388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.105180.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G091900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436783.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1L6K4Y20.0A0A1L6K4Y2_POPTO; Auxin response factor
STRINGPOPTR_0011s09450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]