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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G080000.1 | ||||||||
Common Name | POPTR_0011s02710g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26664.7 Da PI: 5.8541 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.9 | 4.8e-05 | 189 | 225 | 13 | 54 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+++++ +Lr ++P + ++ +++L +Av+Y+ksL Potri.011G080000.1 189 RQKMKTMVKTLRGIVPGgD------QMNTVTVLDEAVRYLKSL 225 799*************955......8***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.937 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-6 | 183 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-8 | 186 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.13E-6 | 186 | 230 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-8 | 187 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MHSDRYFRSK EAMPPLTNQV DNNNMHFPVA TTFAAVQPLA AKHLMPVHGI EFQSSEICPR 60 NFIIFDQADH RSQVMYNPAV AHNHGGPDFN IHATYIQENF ERTDTYNVER EISSSLKEDS 120 DDIDALMSLE EEEPEECDGE EVSTARTCRN YGSSSPDSCS SYGAKPMKNG SSVQKCSSSG 180 SSSNSERKRQ KMKTMVKTLR GIVPGGDQMN TVTVLDEAVR YLKSLKVEVQ KLGVGNFKN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.14687 | 9e-62 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G080000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316733.2 | 0.0 | transcription factor bHLH144 | ||||
Refseq | XP_024437105.1 | 0.0 | transcription factor bHLH144 | ||||
Refseq | XP_024437106.1 | 0.0 | transcription factor bHLH144 | ||||
Refseq | XP_024437107.1 | 0.0 | transcription factor bHLH144 | ||||
Refseq | XP_024437108.1 | 0.0 | transcription factor bHLH144 | ||||
Refseq | XP_024437109.1 | 0.0 | transcription factor bHLH144 | ||||
TrEMBL | B9I102 | 1e-180 | B9I102_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s02710.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11411 | 11 | 13 | Representative plant | OGRP5968 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 4e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G080000.1 |
Entrez Gene | 7483586 |