PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G061800.1
Common NamePOPTR_0011s06020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 282aa    MW: 31465.1 Da    PI: 4.6904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G061800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19122172255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  Potri.011G061800.1 122 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFKTAEEAALAYDKAALRIRG 172
                         7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-31121181IPR001471AP2/ERF domain
SMARTSM003805.8E-37122186IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23122182IPR016177DNA-binding domain
CDDcd000181.82E-30122180No hitNo description
PfamPF008474.7E-14122172IPR001471AP2/ERF domain
PROSITE profilePS5103223.472122180IPR001471AP2/ERF domain
PRINTSPR003677.0E-11123134IPR001471AP2/ERF domain
PRINTSPR003677.0E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAIQSDHLAT SEGILENVWA SYIGEHRGDK VTSNDEQEEI KSSQELPSLD SRDGSMEVLE  60
RLPSLGRWIS MGTESWEGLL DGIIPEINYK ELTSNDRAEN KGPSSLSSKQ NTVKTEKVTT  120
RHYRGVRRRP WGKYAAEIRD SSRKGARVWL GTFKTAEEAA LAYDKAALRI RGPKTNLNFP  180
LETVAKAMGI DCSKNDYSVS STTTSQGYDT SCTILGSVDK VSVIPRRRVS RDWEVNDDLI  240
IMEQPGIQRM ACVEELSVDD FDVVEFQDLG SDYLDSMFSS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-28121181161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G061800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2169170.0AC216917.1 Populus trichocarpa clone POP066-L06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377449.20.0ethylene-responsive transcription factor ERF091, partial
TrEMBLU5FZ650.0U5FZ65_POPTR; Uncharacterized protein
STRINGPOPTR_0011s06020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-40ERF family protein