PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G060000.2 | ||||||||
Common Name | POPTR_0011s05890g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | VOZ | ||||||||
Protein Properties | Length: 490aa MW: 54567.2 Da PI: 5.7822 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 429.8 | 4.1e-132 | 207 | 424 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqg.sewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rpaqg +w+qdycssfh ++alneg+pg++p+lrp+gi+lkdgllf++lsakv+gk+vgipecegaatakspw Potri.011G060000.2 207 PPPSAFLGPKCALWDCPRPAQGgLDWYQDYCSSFHHAVALNEGPPGLSPILRPGGIGLKDGLLFSSLSAKVEGKDVGIPECEGAATAKSPW 297 89******************9648******************************************************************* PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldala 181 na+elfdls+l+getirewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyein++da+a Potri.011G060000.2 298 NAPELFDLSVLKGETIREWLFFDKPRRAFESGNRKQRSLPDYTGRGWHESRKQVMNEFGGLKRSYYMDPQPLNNFEWHLYEYEINNCDACA 388 ******************************************************************************************* PP VOZ 182 lyrlelklvdekksakgkvskdsladlqkklgrlta 217 lyrlelk vd+kksakgk++++s++dlqk++grlta Potri.011G060000.2 389 LYRLELKAVDGKKSAKGKLANESVVDLQKQMGRLTA 424 **********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MGKGSKINCK SASHKLFKDK AKNRVDDLQG MFLDLQFARK ESRTVDVAVL EEQVHQMLRE 60 WKAELNEPSP ASSLQQGGSL GSFSTDICRL LQLCEEEDDA TSALAAPKPE PNDQSLQVGN 120 NVVFQEGYGV NHDQQEHVFP FVDQCKDSPS GVRSMVINNM EGVAQLEYHH FDLPQNSEQN 180 FYTGFNDMDL GEDATHLVSS YLPSMCPPPS AFLGPKCALW DCPRPAQGGL DWYQDYCSSF 240 HHAVALNEGP PGLSPILRPG GIGLKDGLLF SSLSAKVEGK DVGIPECEGA ATAKSPWNAP 300 ELFDLSVLKG ETIREWLFFD KPRRAFESGN RKQRSLPDYT GRGWHESRKQ VMNEFGGLKR 360 SYYMDPQPLN NFEWHLYEYE INNCDACALY RLELKAVDGK KSAKGKLANE SVVDLQKQMG 420 RLTAEFPSDH KRAVKGRTKV NAKAGVRNVY SGATQAAPTN EAYDYGPGPH YDYLVENLGD 480 YYLTQFKKP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G060000.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377435.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_024437335.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | B9N9L2 | 0.0 | B9N9L2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05890.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G060000.2 |
Entrez Gene | 18103089 |
Publications ? help Back to Top | |||
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