PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 1721aa MW: 193436 Da PI: 5.5466

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.011G057700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.7e-19	28	83	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ ql++Le++++ + yps e+r+eL++klgL++rq ++WF+ rR k++k Potri.011G057700.1 28 PKRQMKTPFQLQTLENAYATDTYPSDEMRAELSEKLGLSDRQLQMWFCHRRLKDRK 83 69****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-18	7	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.25E-17	16	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.086	24	84	IPR001356	Homeobox domain
SMART	SM00389	1.3E-19	26	88	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-16	28	83	IPR001356	Homeobox domain
CDD	cd00086	2.10E-15	29	85	No hit	No description
SMART	SM00571	1.2E-21	515	574	IPR018501	DDT domain
PROSITE profile	PS50827	16.715	515	574	IPR018501	DDT domain
Pfam	PF02791	1.7E-17	516	571	IPR018501	DDT domain
Pfam	PF05066	4.4E-15	697	765	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.2E-6	906	949	IPR028942	WHIM1 domain
Pfam	PF15613	3.6E-13	1088	1160	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1721 aa Download sequence Send to blast
MEEANSEGEN HSKSKSNAMN SNEGQSKPKR QMKTPFQLQT LENAYATDTY PSDEMRAELS 60 EKLGLSDRQL QMWFCHRRLK DRKENLVKHR KAAPLPGSPL EDMRIVRADS GSDYGSGSVS 120 GSSPLSESRK VVLDDGHKVR RHYESSPRSV TELRAIACVE AQLGEPLRED GPILGMEFDP 180 LPPDAFGEPI AAITEQPKRM GYSYEDKVYE RRDAKSSKDP ASIRSDTYGP HIQSPYHDSP 240 VDTLRGRASP FGVGQIPRAR LLSQQDKRGH VFSSTQRDGD YLLQQDTFTK NRTSAQSISH 300 PIMGLENPNV FSDAQTFHND TELQLERKHK IDEPRTAREV EAYEIRTRKE LEKQDILRRK 360 NEERMKKEME RLDRERRKEE ERLMREKQRE EERSLREQKR ELERREKFMQ KEYLRTEKIR 420 QKEELRREKE AVKRKAAMEK ATARKIAKDS LDLIEDEQLE LMELIAASKG LASIVNLNYD 480 TLQNLDSFRD LLITFPSEAV QLKKSFGFQP WLDSEENIGN LLMVWKFFIT FADVLGLWPF 540 TLDEFVQAFH DYDSRLLGEL HVALLKLIIK DIEDVARTPS SGLGINQYYT ANPEGGHPQI 600 VQGAHTWGFD IRNWQQHLNS LTWPEILRQL ALSAGFGPRL KKKCATWAGL GDIDEVKDCE 660 DIVSIIRNGS AAENAFVLMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL 720 ADRIQKSGLR DLTTSKTPEA SISVALTRDQ KLFERIAPST YCVRAAFRKD PADAEAILAE 780 ARKKIRIFEN GFLGGEDADD VERDEDSEGD ADEDPEVDDL ATPMSSNKST VHSSKVNALS 840 GSGSGKVSND ASLTVQNKCE KGLSSFSLNG PKDAVAPSII EQCVTHKDEG TNNADEENIE 900 IDENNSGESW IQGLTEGEYS HLSVEERLSA LVVLVGISNE GNSIRAVLED RLEAANVLKK 960 QMWAEAQLDR SRLKEEFISK LDFPSFTGGK VETQVTSSAV EGSQSPLVLV DGKNKEASPS 1020 NAEDQKPLPE DAENHGSCAL SEKALVIQDL SLNPDNISAQ QHGYASKRSR SQLKAYIAHL 1080 AEEMCIYRSL PLGQDRRRNR YWQFVASASR NDPCSGRIFV ELHDGNWRVI DSEEAFDTLL 1140 SSLDTRGVRE SHLCIMLQKI ELSFKENVRR NLGSANIVCQ SGTTDEKETA ETDTADCPAD 1200 DSPSSMVCVS SSDTLDAFSL FSIELGRNSA EKKGALKRYQ DFQNWMWKEC FNSSTLCAVK 1260 YGKKRCEQLL DTCDLCLDTY LSEDPHCLSC HQTFKFENKK FEFAEHEIQC KKKRKVDPGN 1320 ACTCDSSLPP GTRLLTALLS CIEVSVPQEA LESFWMGIPR KDWGMKLAMP SSTEELLQIL 1380 TVFESAIKRE RLSSNFEMTK ELLGSSALSG SAAHDSASLG LVPVLPWMPK TTAAVALRLF 1440 ELDASIIYVK NEKPKPSADK PVKLYMKLSS RYSPFKNEDV ELKDTKQEEH IKEDIVDLRG 1500 KQSSYKRGRG RRDQGLATKW QRRMPGLKSD TGRKSSSRGT QNLNQGPRQQ GKKTNLQATS 1560 RGRRTVRKRR VEKMQPKEPL LGRITDKVAS TSYLSKKSAV HNNYVKSFGN IGDEDWSVKK 1620 GRMNGDDNSN IMEEAESDDN VEEVYGQGNW EPGFSGISNG WNRNPMEVSD DDANVSNGIE 1680 AMGDDDSEGD MEMSDGSDRA ANRVQSDEGM DSADSDEYSD *

Sequence ? help Back to Top

Protein Sequence Length: 1721 aa Download sequence Send to blast

MEEANSEGEN HSKSKSNAMN SNEGQSKPKR QMKTPFQLQT LENAYATDTY PSDEMRAELS  60
EKLGLSDRQL QMWFCHRRLK DRKENLVKHR KAAPLPGSPL EDMRIVRADS GSDYGSGSVS  120
GSSPLSESRK VVLDDGHKVR RHYESSPRSV TELRAIACVE AQLGEPLRED GPILGMEFDP  180
LPPDAFGEPI AAITEQPKRM GYSYEDKVYE RRDAKSSKDP ASIRSDTYGP HIQSPYHDSP  240
VDTLRGRASP FGVGQIPRAR LLSQQDKRGH VFSSTQRDGD YLLQQDTFTK NRTSAQSISH  300
PIMGLENPNV FSDAQTFHND TELQLERKHK IDEPRTAREV EAYEIRTRKE LEKQDILRRK  360
NEERMKKEME RLDRERRKEE ERLMREKQRE EERSLREQKR ELERREKFMQ KEYLRTEKIR  420
QKEELRREKE AVKRKAAMEK ATARKIAKDS LDLIEDEQLE LMELIAASKG LASIVNLNYD  480
TLQNLDSFRD LLITFPSEAV QLKKSFGFQP WLDSEENIGN LLMVWKFFIT FADVLGLWPF  540
TLDEFVQAFH DYDSRLLGEL HVALLKLIIK DIEDVARTPS SGLGINQYYT ANPEGGHPQI  600
VQGAHTWGFD IRNWQQHLNS LTWPEILRQL ALSAGFGPRL KKKCATWAGL GDIDEVKDCE  660
DIVSIIRNGS AAENAFVLMR EKGLLLPRRS RHRLTPGTVK FAAFHVLSLE GSKGLTVLEL  720
ADRIQKSGLR DLTTSKTPEA SISVALTRDQ KLFERIAPST YCVRAAFRKD PADAEAILAE  780
ARKKIRIFEN GFLGGEDADD VERDEDSEGD ADEDPEVDDL ATPMSSNKST VHSSKVNALS  840
GSGSGKVSND ASLTVQNKCE KGLSSFSLNG PKDAVAPSII EQCVTHKDEG TNNADEENIE  900
IDENNSGESW IQGLTEGEYS HLSVEERLSA LVVLVGISNE GNSIRAVLED RLEAANVLKK  960
QMWAEAQLDR SRLKEEFISK LDFPSFTGGK VETQVTSSAV EGSQSPLVLV DGKNKEASPS  1020
NAEDQKPLPE DAENHGSCAL SEKALVIQDL SLNPDNISAQ QHGYASKRSR SQLKAYIAHL  1080
AEEMCIYRSL PLGQDRRRNR YWQFVASASR NDPCSGRIFV ELHDGNWRVI DSEEAFDTLL  1140
SSLDTRGVRE SHLCIMLQKI ELSFKENVRR NLGSANIVCQ SGTTDEKETA ETDTADCPAD  1200
DSPSSMVCVS SSDTLDAFSL FSIELGRNSA EKKGALKRYQ DFQNWMWKEC FNSSTLCAVK  1260
YGKKRCEQLL DTCDLCLDTY LSEDPHCLSC HQTFKFENKK FEFAEHEIQC KKKRKVDPGN  1320
ACTCDSSLPP GTRLLTALLS CIEVSVPQEA LESFWMGIPR KDWGMKLAMP SSTEELLQIL  1380
TVFESAIKRE RLSSNFEMTK ELLGSSALSG SAAHDSASLG LVPVLPWMPK TTAAVALRLF  1440
ELDASIIYVK NEKPKPSADK PVKLYMKLSS RYSPFKNEDV ELKDTKQEEH IKEDIVDLRG  1500
KQSSYKRGRG RRDQGLATKW QRRMPGLKSD TGRKSSSRGT QNLNQGPRQQ GKKTNLQATS  1560
RGRRTVRKRR VEKMQPKEPL LGRITDKVAS TSYLSKKSAV HNNYVKSFGN IGDEDWSVKK  1620
GRMNGDDNSN IMEEAESDDN VEEVYGQGNW EPGFSGISNG WNRNPMEVSD DDANVSNGIE  1680
AMGDDDSEGD MEMSDGSDRA ANRVQSDEGM DSADSDEYSD *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	83	RRLKDRKE
2	1310	1315	KKKRKV

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.011G057700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024436990.1	0.0	homeobox-DDT domain protein RLT1 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2K1YG45	0.0	A0A2K1YG45_POPTR; Uncharacterized protein
STRING	POPTR_0011s05660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Potri.011G057700.1
Entrez Gene	18103066