PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.011G055600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 358aa MW: 39200.8 Da PI: 8.883 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.6 | 1.6e-39 | 61 | 120 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Potri.011G055600.1 61 QQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 120 7899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 9.9E-34 | 62 | 118 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 9.0E-28 | 63 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 64 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 66 | 102 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 358 aa Download sequence Send to blast |
MIPLREEMLG NCEKMVVISS TTNAWPQNQI DEKSLMASTS KLMERPSQEV LSQPQQQQQL 60 QQALKCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR GGTLRNVPVG GGCRKNKRVK 120 RPASAAEGAS NSVSSANPNP QTPIDHISST SNHINPLFYG LSGSNPSEMN LPFPGRFNPR 180 MDSAVSGYHD LQPQLNALAL GFSSGIMTTN DANGFNPTKQ IQDVVTSNSL LSSYSNLFGS 240 STTSTNTTSP TIASLLASSF NQQKFTNSGI KESTRAPNYF QSLTVPFKEL QMNGNSESGI 300 GMKGVKTEHN QNRLDWNVPC QNQIEQVGLS DPSMYWNTTT SVGSWHDPAN MGSSVLL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.011G055600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT164738 | 0.0 | KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377384.2 | 0.0 | dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A2K1YFZ8 | 0.0 | A0A2K1YFZ8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05450.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4522 | 33 | 56 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28310.1 | 4e-40 | Dof family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.011G055600.1 |