PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G051600.1 | ||||||||
Common Name | POPTR_0011s05130g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 212aa MW: 24383.6 Da PI: 9.7881 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.7 | 1.6e-32 | 32 | 133 | 2 | 102 |
HHHHHHHHHC..........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 Flkklyeile..........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k+y++le +++ k+++sw+++gn fvv+ + ef++ Lp+yFkhsnf+SF+RQLn+YgFkk+++++ weFk Potri.011G051600.1 32 FLSKTYDLLEeggahdsvddHPHGKRVVSWNAEGNGFVVWSPAEFSELTLPRYFKHSNFSSFIRQLNTYGFKKTSSKQ---------WEFK 113 9*********88887777766799**************************************************9988.........**** PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 h++F+kg++++l +i rkk Potri.011G051600.1 114 HEKFQKGRRHMLVEIIRKKC 133 ****************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.3E-35 | 23 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.25E-25 | 28 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.0E-40 | 28 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.5E-29 | 32 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MAATFSQLDQ DTTSKSSSSN TRSPRTRSPA PFLSKTYDLL EEGGAHDSVD DHPHGKRVVS 60 WNAEGNGFVV WSPAEFSELT LPRYFKHSNF SSFIRQLNTY GFKKTSSKQW EFKHEKFQKG 120 RRHMLVEIIR KKCEPSMFPA YLKASSNQQN AIIDMEETNC LTLMAENKNL RREKLELQIQ 180 IAQFKALETK LLDCLTQYNI GNHQNKTRRL C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 1e-16 | 30 | 131 | 2 | 104 | Putative transcription factor |
5d5x_B | 1e-16 | 30 | 131 | 2 | 104 | Putative transcription factor |
5d5x_E | 1e-16 | 30 | 131 | 2 | 104 | Putative transcription factor |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G051600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377347.1 | 1e-159 | heat stress transcription factor A-6b | ||||
TrEMBL | U5FYD0 | 1e-158 | U5FYD0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05130.1 | 1e-159 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 8e-33 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G051600.1 |
Entrez Gene | 18103014 |