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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.011G051600.1 |
Common Name | POPTR_0011s05130g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
HSF |
Protein Properties |
Length: 212aa MW: 24383.6 Da PI: 9.7881 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.011G051600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 103.7 | 1.6e-32 | 32 | 133 | 2 | 102 |
HHHHHHHHHC..........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
HSF_DNA-bind 2 Flkklyeile..........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82
Fl+k+y++le +++ k+++sw+++gn fvv+ + ef++ Lp+yFkhsnf+SF+RQLn+YgFkk+++++ weFk
Potri.011G051600.1 32 FLSKTYDLLEeggahdsvddHPHGKRVVSWNAEGNGFVVWSPAEFSELTLPRYFKHSNFSSFIRQLNTYGFKKTSSKQ---------WEFK 113
9*********88887777766799**************************************************9988.........**** PP
ESXXXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 83 hksFkkgkkellekikrkks 102
h++F+kg++++l +i rkk
Potri.011G051600.1 114 HEKFQKGRRHMLVEIIRKKC 133
****************9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 212 aa
Download sequence Send
to blast |
MAATFSQLDQ DTTSKSSSSN TRSPRTRSPA PFLSKTYDLL EEGGAHDSVD DHPHGKRVVS 60 WNAEGNGFVV WSPAEFSELT LPRYFKHSNF SSFIRQLNTY GFKKTSSKQW EFKHEKFQKG 120 RRHMLVEIIR KKCEPSMFPA YLKASSNQQN AIIDMEETNC LTLMAENKNL RREKLELQIQ 180 IAQFKALETK LLDCLTQYNI GNHQNKTRRL C*
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