PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.011G047500.1

Common Name

POPTR_0011s04730g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 306aa MW: 33893.5 Da PI: 8.2685

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.011G047500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.5	1.9e-35	45	102	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + lkcprC+stntkfCyynny+ sqPr+fCk+C+r+WtkGG lrnvPvGggr++++++ Potri.011G047500.1 45 EPLKCPRCESTNTKFCYYNNYNKSQPRHFCKSCKRHWTKGGNLRNVPVGGGRKNKRQK 102 5789***********************************************8777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.9E-31	46	100	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-22	47	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.447	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGLSSKQVTG DGLDWSQTLL QAHTLELPKP PVIRRQQQQN QLQFEPLKCP RCESTNTKFC 60 YYNNYNKSQP RHFCKSCKRH WTKGGNLRNV PVGGGRKNKR QKTSKTSSNT TTSSSTTAST 120 TAPSNNNSAT NMTNWVNPQL AIQAQQQKQN LPDLVLGGQK DLSEILYQAM INPPSSVLQQ 180 NSISCNNFDT KSFNVNNNGV LLGSSVSIPQ NQGLLFPYSS SFDTHPSSIC TSFQPSNVYN 240 YTGESMEDST ITTTMPPTSS TITHSLQVPN TSSGMDMTNY WNWDDIENYV SADLNVPWDD 300 SEIKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.011G047500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316631.1	0.0	dof zinc finger protein 4
TrEMBL	B9HYL3	0.0	B9HYL3_POPTR; Uncharacterized protein
STRING	POPTR_0011s04730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	5e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Potri.011G047500.1
Entrez Gene	7485564