PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.011G043600.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 781aa    MW: 85794.9 Da    PI: 7.4642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.011G043600.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18232331198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ + 
  Potri.011G043600.3 232 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLRVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE- 320
                         89**************************555567778***************9989999999***9.********************766. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++lv+++++
  Potri.011G043600.3 321 PEGKLVMGFRK 331
                         77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-30229335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-19230331IPR015300DNA-binding pseudobarrel domain
CDDcd100179.33E-22230331No hitNo description
PROSITE profilePS5086311.293232333IPR003340B3 DNA binding domain
PfamPF023627.6E-16232331IPR003340B3 DNA binding domain
SMARTSM010197.3E-19232333IPR003340B3 DNA binding domain
PROSITE profilePS5105014.223458508IPR011124Zinc finger, CW-type
PfamPF074961.0E-12463505IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MACARKSFVL TPNPAWPLFY HSPFPERLKD LSVKSWSQLA GSGPVPWRQA PSLFNSSATQ  60
SELQPRMPYE VDRLNAGERF SALSLEKRKL EDFPERFING SPRNHLQDIV ENGNAGIIDD  120
EQPQMLSSLR EDISAQQFGI TIPYASPSKL KGQIEGSVNP LLPAPLPLFA KRVHGTLHKG  180
VDSSVDGQIR NGRPRIDARG KSQLLPRYWP RFTDEELQQI SGNPNSVIKP LFEKMLSASD  240
AGRIGRLVLP KKCAEAYFPP ISQPEGLPLR VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT  300
PCIQNMQLQA GDIVTFSRLE PEGKLVMGFR KASSASLSDQ DNETSQIGDG VSANGDAELG  360
PSPWSKVDKS GYIAKEVLEA KSSIKKRKSS TLGSKSKRLR IENEDMIELK LTWEEAQGLL  420
RPAPDHVPSI VVIEGFEFEE YEDAPVLGKP TIFAMDNVGH KIQWVQCEDC LKWRKLPLNV  480
LLPSKWTCSG NTWDSERSSC SAAQDLTSEQ LENLLPSRNL VTSKRLKAAK KDIDNVEALG  540
GLDTLANLAI LGEGEALLAS SQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCQ  600
TVKRRFKTLM MKREKKQSEK EAETTRKQQE SSAEKLLDDD PSPSSNAGSA SGSPNKKKAV  660
SEVSDDDPNR MKSSTSPFKG QIDLNIQPER EDELSPGSDS GGMMRMLQDA SERYLRMQRF  720
LSSDGDNIPA SNHSVSSGGA DEKAGSGIML GGSHQDVSED HPSAFSLIAS ESASASTPAT  780
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-652103352127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.011G043600.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437475.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2K1YFG80.0A0A2K1YFG8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-160HSI2-like 1