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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G040400.1 | ||||||||
Common Name | POPTR_0011s04020g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 35643.6 Da PI: 4.6495 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.6e-14 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+++Ed+ l ++k++G +W+ ++ g+ R++k+c++rw +yl Potri.011G040400.1 15 RGTWSADEDQMLRAYIKRYGIWNWNEMPKAAGLSRSGKSCRLRWMNYL 62 89******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE + +++++++lG++ W+tIa++++ gRt++++k++w++yl Potri.011G040400.1 68 RGNLSKEEVQTIIKLHEMLGNR-WSTIAAKLP-GRTDNEIKNFWNTYL 113 7899******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.414 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.88E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-20 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.606 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.82E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MRSISQKYQN FCLKRGTWSA DEDQMLRAYI KRYGIWNWNE MPKAAGLSRS GKSCRLRWMN 60 YLRPGIKRGN LSKEEVQTII KLHEMLGNRW STIAAKLPGR TDNEIKNFWN TYLRNRFNNN 120 ISNTAVQAPK LQGTSPVNDI NENQHMEENV GSLESFGEPS FWDQPFSMEA QMCKVEDYGE 180 TYTDEMWVQE LLSYPNASHN FECKQRNSSD IDVSLPTSPN ILNSDEYSSN GTLPMSPIIS 240 TDNFSSSSSN PVNDFNENQH MVEIGSLESF GELSLWDHPF SMEAQLCKVE DYGETYTDQM 300 WVQELLYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 6 | 117 | 18 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G040400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002317254.2 | 0.0 | transcription factor MYB14 | ||||
TrEMBL | B9HYP4 | 0.0 | B9HYP4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s04020.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15840 | 4 | 11 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-50 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G040400.1 |
Entrez Gene | 7495278 |