PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TALE

Protein Properties

Length: 374aa MW: 41549.6 Da PI: 6.5955

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.011G011100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	301	335	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Potri.011G011100.1 301 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 335 569*****************************885 PP
2	ELK	37.7	4.3e-13	255	276	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlr YsgyLgsLkqEF+ Potri.011G011100.1 255 ELKGQLLRRYSGYLGSLKQEFM 276 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	3.5E-19	119	163	IPR005540	KNOX1
Pfam	PF03790	6.0E-21	121	159	IPR005540	KNOX1
SMART	SM01256	5.1E-26	168	219	IPR005541	KNOX2
Pfam	PF03791	1.3E-20	171	218	IPR005541	KNOX2
PROSITE profile	PS51213	10.912	255	275	IPR005539	ELK domain
SMART	SM01188	8.6E-8	255	276	IPR005539	ELK domain
Pfam	PF03789	1.8E-10	255	276	IPR005539	ELK domain
PROSITE profile	PS50071	12.989	275	338	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.33E-19	277	352	IPR009057	Homeodomain-like
SMART	SM00389	7.4E-13	277	342	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-28	280	340	IPR009057	Homeodomain-like
CDD	cd00086	1.80E-12	287	339	No hit	No description
Pfam	PF05920	6.8E-17	295	334	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	313	336	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MEGGGGDGGS STTSCMMAFG DNSNGLCPMM MMTPLMSSSS SAHHQHPHHH HRANEGDSSI 60 SNTLFLPLPP TNNQGHNRIH SNASGSSSMI IDDHNRNHNN NTVTATGCYF MDNNDGSSSS 120 VKAKIMAHPH YHRLLAAYAN CQKVGAPPEV VARLEEACAS AASIAPANTG CIGEDPALDQ 180 FMEAYCEMLT KYEQELSKPL KEAMLFLQRV ECQFKALTLS SPISGCGDGN DRNVSSEEEV 240 DVNNNFIDPQ AEDQELKGQL LRRYSGYLGS LKQEFMKKRK KGKLPKEARQ QLLDWWSRHY 300 KWPYPSESQK LALAESTGLD QKQINNWFIN QRKRHWKPSE DMQFVVMDAG HPHYYMDNVL 360 GNPFPMDISP TLL*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MEGGGGDGGS STTSCMMAFG DNSNGLCPMM MMTPLMSSSS SAHHQHPHHH HRANEGDSSI  60
SNTLFLPLPP TNNQGHNRIH SNASGSSSMI IDDHNRNHNN NTVTATGCYF MDNNDGSSSS  120
VKAKIMAHPH YHRLLAAYAN CQKVGAPPEV VARLEEACAS AASIAPANTG CIGEDPALDQ  180
FMEAYCEMLT KYEQELSKPL KEAMLFLQRV ECQFKALTLS SPISGCGDGN DRNVSSEEEV  240
DVNNNFIDPQ AEDQELKGQL LRRYSGYLGS LKQEFMKKRK KGKLPKEARQ QLLDWWSRHY  300
KWPYPSESQK LALAESTGLD QKQINNWFIN QRKRHWKPSE DMQFVVMDAG HPHYYMDNVL  360
GNPFPMDISP TLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	279	LKQEFMKKRK
2	276	280	KKRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.3282	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
Uniprot	TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.011G011100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY684937	0.0	AY684937.1 Populus balsamifera subsp. trichocarpa x Populus deltoides homeobox transcription factor KN2 (Kn2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002317151.3	0.0	homeobox protein SBH1
Swissprot	P46608	1e-156	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	A0A2K1YE56	0.0	A0A2K1YE56_POPTR; Uncharacterized protein
TrEMBL	Q5UL96	0.0	Q5UL96_9ROSI; Homeobox transcription factor KN2
STRING	XP_002518420.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-139	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Potri.011G011100.1

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]