![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.011G004900.1 | ||||||||
Common Name | POPTR_0021s00570g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 14287.6 Da PI: 10.8548 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.6 | 2.9e-10 | 9 | 90 | 4 | 83 |
E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83 +++ +++r+ lpk+ + ++ g+ + + + +d+ gr+W +k+++r+ ++ ++++ W+++++++gLk gD v + Potri.011G004900.1 9 SV-SKSDATNNRMELPKESLGNFpipAGQ--NYFNFVAMDTLGRRWGFKVSIRNVGRYkkPWMSGQWRRYAQEKGLKKGDRVKLI 90 44.455556678********777877444..4578999************984444334599******************88765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.065 | 5 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-12 | 6 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.04E-10 | 7 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-11 | 8 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 123 aa Download sequence Send to blast |
MEEVAMEKSV SKSDATNNRM ELPKESLGNF PIPAGQNYFN FVAMDTLGRR WGFKVSIRNV 60 GRYKKPWMSG QWRRYAQEKG LKKGDRVKLI MQVEGNAVRS YRIRAERNLT MRIWIPVEEF 120 AI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.011G004900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011016151.1 | 4e-77 | PREDICTED: uncharacterized protein LOC105119681 | ||||
TrEMBL | U7DZS0 | 3e-84 | U7DZS0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0021s00570.1 | 4e-85 | (Populus trichocarpa) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.011G004900.1 |
Entrez Gene | 18111234 |