PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G223300.2 | ||||||||
Common Name | POPTR_0010s23010g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 353aa MW: 38598.2 Da PI: 5.8448 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55 | 1.1e-17 | 256 | 289 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Potri.010G223300.2 256 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 289 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 5.7E-76 | 5 | 341 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 3.8E-16 | 250 | 300 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.609 | 250 | 286 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-15 | 254 | 313 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 254 | 287 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.03E-14 | 255 | 302 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 256 | 281 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.4E-15 | 256 | 289 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MIGQTNTSSG FMDEIDCGSF FDHIDDLLDF PSDDVDASLP DCTTTNNHAS CFIDNDDNSF 60 PGIWSSQSDS LPGSASDLSA ELSVPYEDIV QLEWLSNFVE DSFSGGSLTM KKEESASVDK 120 KDSTPHHQFQ TSSPVSVLES SSDCSGEKNA PRSPEIVASG KCGRARSKRP RPAAFTPRPA 180 MQLVSPTSSI TEVPQQFVSP RVPSDSESFA ESRLVIKIPE HVDPEHKKKK KIKFIVPSGT 240 VEMNQNSQPQ QAVRKCMHCE ITKTPQWRAG PMGPKTLCNA CGVRYKSGRL FPEYRPAASP 300 TFVPSLHSNS HKKVVEMRAK AGEKITTSRP ATMMVNSPEF IPNESNPAMD YM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 171 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8224 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G223300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC010688 | 0.0 | LC010688.1 Populus nigra PniGATA8a mRNA for GATA type zinc finger domain, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316371.3 | 0.0 | GATA transcription factor 8 | ||||
TrEMBL | A0A2I4KL32 | 0.0 | A0A2I4KL32_POPTR; GATA transcription factor | ||||
TrEMBL | A0A2K1YYK8 | 0.0 | A0A2K1YYK8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s23010.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 4e-43 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G223300.2 |
Entrez Gene | 7458664 |