PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G223200.1
Common NamePOPTR_0010s23000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 707aa    MW: 77657.7 Da    PI: 7.6578
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G223200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.2e-24152253199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF  
  Potri.010G223200.1 152 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL- 239
                         89****************************986555555..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Potri.010G223200.1 240 -RAENGDLCVGIRRA 253
                         .4488999****997 PP
2Auxin_resp115.45.1e-38304387183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++Fe vY+Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Potri.010G223200.1 304 AASLAANGQPFEAVYYPRASTPEFCVKASAVRSAIQIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 387
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-38144260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-30145261IPR015300DNA-binding pseudobarrel domain
CDDcd100173.13E-22151252No hitNo description
SMARTSM010199.4E-23152254IPR003340B3 DNA binding domain
PfamPF023624.0E-22152253IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38152254IPR003340B3 DNA binding domain
PfamPF065078.6E-33304387IPR010525Auxin response factor
PROSITE profilePS5174518.17620700IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MFEAKLRDCS SQILQIPKLQ SGPMIREFAV MNSQKEKMRV AEKCLDSQLW HACAGSMVQM  60
PAVNSKVFYF PQGHAEHAQG SVEFGHFQIP ALIPCKVSAI KYMADPETDE VYAKIRLIPL  120
NNSDLMLGHG CGEDNDDRLH SGNESQEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR  180
LDYTAEPPVQ TILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR  240
AENGDLCVGI RRAKRGIGGN ECSSGWNSFA GYSGFFREDE SKLMRRNGNG DMKGKVKAES  300
VIEAASLAAN GQPFEAVYYP RASTPEFCVK ASAVRSAIQI QWCPGMRFKM AFETEDSSRI  360
SWFMGTISSV QVADPIRWPN SPWRLLQVAW DEPDLLHNVK RVSPWLVELV SNMPAIHLSP  420
FSPPRKKLRL PQPPDFPLLG QIPMPSFTGN PLRSNSPLCC VSDNIPAGIQ GARHAQFGLS  480
SSDLHFNKLQ AGLFPVDFQR LDRAAPPSRI SNSNFVGNTQ NSESISCLLT MGNSSQSMKG  540
SDTKTPHILL FGQLIVTDQQ SSQSCSGDTN ANSSSDGHPG KAISDGSGSA SQQNGPLENS  600
SGGRCPWYKD YQKTDPGLET GHCKVFMESE DVGRTLDLSV LGSYEELHRK LVNMFGIESS  660
EMLSNVLYRN AAGATKHAGD EPFSEFLKTA RRLTILSDAS SDNVGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-793140837388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G223200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316370.30.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2K1YYK20.0A0A2K1YYK2_POPTR; Auxin response factor
TrEMBLA0A385JIK60.0A0A385JIK6_POPTO; Auxin response factor
STRINGPOPTR_0010s23000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]