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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G220000.1 | ||||||||
Common Name | POPTR_0010s22670g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 1722aa MW: 188528 Da PI: 5.9653 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.8e-07 | 803 | 844 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e++ + + +G++ +++Ia+ + +++ +c+++++k Potri.010G220000.1 803 PWTSDEKEIFMHKLATFGKD-FRKIASFLD-HKSTADCVEFYYK 844 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 31.1 | 5.3e-10 | 1012 | 1052 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ ++ I++ + +Rt+ qck ++ Potri.010G220000.1 1012 DWTDEEKSIFIQAVSSYGKD-FAMISQVVR-TRTRDQCKVFFS 1052 5*****************99.*********.********8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.42E-13 | 787 | 847 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 795 | 845 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.284 | 799 | 850 | IPR017884 | SANT domain |
SMART | SM00717 | 3.7E-7 | 800 | 848 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 12.498 | 1008 | 1059 | IPR017884 | SANT domain |
SMART | SM00717 | 6.9E-9 | 1009 | 1057 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.46E-11 | 1010 | 1059 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-7 | 1012 | 1053 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-8 | 1012 | 1052 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.48E-7 | 1013 | 1051 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1722 aa Download sequence Send to blast |
MPPEPLPWDR KDFFKERKHE RSESTSSSFG GGSTPRWREF PFSSANNYGS PRDFNRWGPH 60 DFRRPPGHGK QGGWHMLAEE SGHVLSPYRL SDKMLEDENC RPFSRGDGRY GRNNRENRGY 120 VSQRDWRGGH SWEMINGSPN MPGRQHDVNN DQRSVDEMLM YPPSHPAHSD FVNSWDQHQL 180 KDQDDNNKMG GVVGSGTGQR GDREIPLDWR PLKWTRSGSL SSRGSGFSHS SSSKSLGGVD 240 SNEGKTELQP KNATPVQSPS VDVAARVTSV ALSEEISSRK KARLGWGEGL AKYEKKKVEG 300 PDASENKDGA AVSASNMESI HFQTSNLADK SPRVMGFSDC ASPATPSSVA CSSSPGLEEK 360 TFLKSTNADN IASNLCGSPS VGSQSHIEGL SFNLEKMDVS SIANLGSSLA ELLQSDDPSS 420 MDSGFVRSTA MNKVLVWKSD ISKALELTES EIDSLENELK SMKFEYGSRC PWPAASSPLF 480 VSDVKPCSVQ GVASNSVPRP SPLQVASRGD GIVEKVSLCN GGLEVHGDVK DDDIDSPGTA 540 TSKLVEPVCL VRIDSSTVAL ENDFDGIQSA RMDLKGPVPR ADDEETGVFA CKDDVISSGD 600 VISETNGEDN LCSLILASNK ESASGASEVF NKLFPSDQCK FDFSCVTNGS SWQSGDLVVE 660 KIAKKKRLLR FKETAVTLKF KAFQHLWKEE MRLPSLRKYP AKSQKKWEPS LRTTHIGYQK 720 HRSSIRARFS SPAGNLSLVP TTEILNFTSK LLSDSQVKPY RNALKMPALI LDKKEKMGSR 780 FISSNGLVED PYAVEKERAM INPWTSDEKE IFMHKLATFG KDFRKIASFL DHKSTADCVE 840 FYYKNHKSDC FEKTKKSKQT KSSTNYLMAS STKWNRELNA ASLDILGVAS RIAADADHAM 900 NSQQLCSGRI FSRGYRNSKI TEGDDGILER SSSFDVLGNE RETVAADVLG SLSSEAMGSC 960 ITTSVDLMEG YREQKCQKVD SVAKAPLISD VMENFDEETC SDESCGEMDP TDWTDEEKSI 1020 FIQAVSSYGK DFAMISQVVR TRTRDQCKVF FSKARKCLGL DLMHPGPRKS RTPVSDNANG 1080 GGSDTEDACA METGSAICSD KLDSKIDEDL PSSIMNTEHD ESDAEEMIGL HEDLNGTEGN 1140 NACGILDKND SRVVDEMVSD PSEAGQSADL AFNVDSKFVN TVHQSEPVQA QKMLIASANA 1200 ESERDQVADK VVSVVESLSV VGAVDVSTSN ASTAVELKGV AEVSGNGLQN GFTEQELFLP 1260 ENSLGSPSGL MQDSTSNASH HPVHMDSCSE FSCSLENMHQ VSVQLESVEK PPVISLPQEN 1320 NLALTNSILQ DSAVIQFEKR HKQDTLQESS RDKQGKISVS GDDYFQHLSD HPLLNHNESS 1380 QIPRGYSLQI PTKKEMNGVI SGRLLSGAQS LPNSEKNVTS QSEAQECYLQ KCSSLKAQHS 1440 VPELPFISQR RGRGSDHLRD HSRRSSDVEK PCRNGDVKLF GKILSNPLQK QNSSARENGE 1500 KEAQHLKPTS KSSTFKFTGH HPTEGNMTLS KCDPNNQPGL ENVPMRSYGF WDGNRIQTGF 1560 PSMPDSATLL VKYPAAFSNY HVSSSKMPQQ TLQAAVKSNE CNLNGISVFP SREITGSNGV 1620 VDYQMYRSHD STGVPSFTVD MKQREVILAE MQRLNGQQTR GMAGVNVVGR GGILVGGACT 1680 GVSDPVAAIK RHYAKADQYG GQSGIVFREE ESWRGKGDIG R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G220000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316354.2 | 0.0 | uncharacterized protein LOC7468404 isoform X1 | ||||
Refseq | XP_024466716.1 | 0.0 | uncharacterized protein LOC7468404 isoform X1 | ||||
TrEMBL | B9HU46 | 0.0 | B9HU46_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s22670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4986 | 33 | 52 |
Representative plant | OGRP3215 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 0.0 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G220000.1 |
Entrez Gene | 7468404 |