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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G208600.2 | ||||||||
Common Name | POPTR_0010s21570g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 23242.7 Da PI: 10.2082 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.1 | 0.00036 | 109 | 148 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L +A +Ik Lq Potri.010G208600.2 109 RRSQKLSDKITALQKLVSPY-----GKADTASVLLEASLHIKLLQ 148 7999**************99.....9****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.1E-7 | 94 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.483 | 98 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-8 | 109 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSMVLAFIWT PKSSMMATSY EMEASVFLIN PLLAINQDFQ AMQMRKRSID ELTNLLPQRE 60 PSDLIENKTA LSTWKTNKRK KANSPEEPWN HQARESISIQ EQKLQVPVRR SQKLSDKITA 120 LQKLVSPYGK ADTASVLLEA SLHIKLLQEQ IQNLFQMLTS SRNSTRPIQQ SQEADGELRD 180 LQSRGLCLVP RSFMLKNDSA ARPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G208600.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT029523 | 1e-137 | CT029523.1 Poplar cDNA sequences. | |||
GenBank | CT029524 | 1e-137 | CT029524.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024467024.1 | 1e-118 | transcription factor bHLH113 isoform X1 | ||||
Refseq | XP_024467026.1 | 1e-119 | transcription factor bHLH113 isoform X3 | ||||
TrEMBL | A0A2K1YXN1 | 1e-117 | A0A2K1YXN1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s21570.1 | 1e-147 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 2e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G208600.2 |
Entrez Gene | 7458594 |