PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G199800.1
Common NamePOPTR_0010s20740g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 291aa    MW: 32331.2 Da    PI: 8.3027
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G199800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000135476123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  Potri.010G199800.1 54 YSCSFCSREFRSAQALGGHMNVH 76
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-65181No hitNo description
PROSITE profilePS5015711.4895481IPR007087Zinc finger, C2H2
SMARTSM003550.00585476IPR015880Zinc finger, C2H2-like
PfamPF139124.1E-65477IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEQAQYWLWM KRKQLLKSQL PASMKSISGS WEEKAFAEDS SGHLGGCIWP PRSYSCSFCS  60
REFRSAQALG GHMNVHRRDR ARLKQSLSPH NYVFQHQNHI QSSLKPLGSH FPSDQVCTLD  120
NYDLDPKLSV SRATNIASTL SNQENLSEHA FVSPPSSSFV QEQHKGYPYL HDNLSGSDHS  180
LSARLHSKPE AERNQGEVKV TCLNHDKFVA TDLFMDLGSV INSHGLLSPG SCGDEAISCK  240
RPRTNVSVLS LLVKPRPNDR YILQSEATGP TSSSKEGIDL ELRLGETPKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-124976229superman protein
2l1o_A2e-124976229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G199800.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316269.10.0zinc finger protein 10
TrEMBLB9HT740.0B9HT74_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-26C2H2 family protein