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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.010G195000.1 |
Common Name | POPTR_0010s20220g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 416aa MW: 44766.7 Da PI: 5.6619 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.010G195000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 56 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEd l ++v ++G ++W++Iar ++ gR++k+c++rw +
Potri.010G195000.1 56 KGPWSPEEDAVLSQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 101
79******************************.***********985 PP
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2 | Myb_DNA-binding | 60.4 | 3.9e-19 | 108 | 152 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r+++T eEd +++ a++++G++ W++Iar ++ gRt++++k++w++
Potri.010G195000.1 108 RKPFTDEEDRIIIAAHAKHGNK-WAAIARLLP-GRTDNSIKNHWNST 152
789*******************.*********.***********986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MQNQTENNND AMRLTEGERE NQMDSPTGGD GGDGGAESGE LGGGSGGSGG TNGKVKGPWS 60 PEEDAVLSQL VSKFGARNWS LIARGIPGRS GKSCRLRWCN QLDPCLKRKP FTDEEDRIII 120 AAHAKHGNKW AAIARLLPGR TDNSIKNHWN STLRRRWADL VRLKPGTSDV MEDGSNERTR 180 ASSEETLSVC DVNSSLPLEV RDVTMDDQPS QHEDKAQTDN IPQTNEVNFA SEPNGNPTLP 240 RPVARVSAFK VYNPLNDPKL GSGLTRTIPT HGCLVQTPKP DSGSCKILED VHCEPIVPSR 300 CGYGCCATPS GGHPPSTLLG PEFVEYEEPP PFSSQELISI ATDLNNIAWI KSGLENSSTG 360 IPSNAASYRM SQGTSVGSQM GMSEQNLRNG HMHFEEGRNK LMSTMAGTIS TQMPA*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU278440 | 0.0 | GU278440.1 Populus balsamifera isolate FBK13 haplotype A myb family transcription factor 109 gene, partial sequence. |
GenBank | GU278442 | 0.0 | GU278442.1 Populus balsamifera isolate INU03 haplotype A myb family transcription factor 109 gene, partial sequence. |
GenBank | GU278453 | 0.0 | GU278453.1 Populus balsamifera isolate LOV02 haplotype B myb family transcription factor 109 gene, partial sequence. |
GenBank | GU278455 | 0.0 | GU278455.1 Populus balsamifera isolate RNA13 haplotype B myb family transcription factor 109 gene, partial sequence. |