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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G187900.2 | ||||||||
Common Name | POPTR_0010s19520g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 613aa MW: 66572.4 Da PI: 6.7641 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.8 | 1.6e-07 | 266 | 286 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg Potri.010G187900.2 266 PCPEFRK-GTCQKGDYCEYAHG 286 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 3.11E-14 | 44 | 154 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.0E-15 | 54 | 178 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 6.1E-4 | 76 | 106 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 14.557 | 76 | 151 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.3E-8 | 76 | 145 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.01E-13 | 78 | 174 | No hit | No description |
SMART | SM00248 | 0.018 | 111 | 143 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.259 | 111 | 146 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.9E-4 | 261 | 287 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.474 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 266 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-5 | 266 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 293 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 296 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.869 | 296 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MCTGSKSDLP PLNPIMEDKS YSQKGSLLYK CSVLLELSAS DDLAGFKIEV EQKGLDIDEA 60 SYWYGRRIGL KKMGFEERTP LMIAAMFGSA HVLKYIIETG KVNVNRVCGS DRVTALHCAV 120 AGGADSSVGV VKLLLDASAD PNSVDGNGNK PGDLFAPSSK WLCNSRKKMI ELLLKGESLS 180 EDEEEKLIIT PQLAREGIEK KEYPLDVTLP DINNGIYGTD EFRMYSFKVK PCSRAYSHDW 240 TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGTCQKGDY CEYAHGVFES WLHPAQYRTR 300 LCKDETGCAR KVCFFAHKPE ELRPVYAATG SAMPSPRSTS SAVDMATLSP LALGSSSLSL 360 PGTSTPPMSP LAAASSSPKS GGLWQNKVSL TPPALQLPGS RLKTAFCARD LDLEMELLGL 420 ENLKPTTLDD VFGSLDPSLM SPMQGVSLKA STQTHYPAAN LSSSPARNPT SYGFDTSAAV 480 AAAVMNSRSS AFAKRSQTAN SASMMSSNLS DWNSPNGKLD WGIQGDELNK LKKSASFGFR 540 SNNNPATTAA SLTASHVDEP DVSWVNSLVK DVPPAGSTFF GAEKQYSRRE GVPDSLPPWM 600 EQMYREQEQM VA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12545 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G187900.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466053.1 | 0.0 | zinc finger CCCH domain-containing protein 29 | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A2K1YWF0 | 0.0 | A0A2K1YWF0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s19520.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G187900.2 |
Entrez Gene | 7490324 |