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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G186700.1 | ||||||||
Common Name | POPTR_0010s19400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 28581.2 Da PI: 6.9964 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.5 | 5.8e-14 | 69 | 115 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN + Lr+l+Pk+ +K++Ka+ L A++++k+L Potri.010G186700.1 69 KSHSQAEKRRRDRINAQLGILRKLVPKS-----EKMDKAALLGSAIDHVKDL 115 79*************************8.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.574 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.77E-14 | 68 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-11 | 69 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-12 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.06E-10 | 74 | 118 | No hit | No description |
SuperFamily | SSF55021 | 8.24E-5 | 159 | 229 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.3E-5 | 161 | 225 | No hit | No description |
CDD | cd04873 | 1.71E-6 | 162 | 198 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEDHYSPCWP AAPAEANWDQ TSAAVYDESF LVPCPSHASA SANFQVYGFP SWSVPLQEAS 60 EDKAASSSKS HSQAEKRRRD RINAQLGILR KLVPKSEKMD KAALLGSAID HVKDLKQKAT 120 EISRTFTIPT EVDEVTVDCD VSQVTSPPST NKDKDNTFIR ASVCCDDRPE LFSELITVLK 180 GLRLTIVRAD IASVGGRVKS ILVLCSECSE EGSVSISTIK QSLNLVLSRI ASSSVPSNYR 240 IRSKRQRFFL PSHLSEQYE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G186700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316199.1 | 0.0 | transcription factor bHLH51 | ||||
Swissprot | Q9XEF0 | 4e-46 | BH051_ARATH; Transcription factor bHLH51 | ||||
TrEMBL | B9HSL8 | 0.0 | B9HSL8_POPTR; BHLH family protein | ||||
STRING | POPTR_0010s19400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5796 | 33 | 51 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 1e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G186700.1 |
Entrez Gene | 7490321 |
Publications ? help Back to Top | |||
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