PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 284aa MW: 31241.5 Da PI: 6.052

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.010G183700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.3	1.9e-18	78	128	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+f ta+eAa a+++a+++++g Potri.010G183700.1 78 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYEAALAYDEAARAMYG 128 56***999.******8...2.35**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.70E-31	78	138	No hit	No description
Pfam	PF00847	4.5E-13	78	128	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.325	79	136	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-34	79	142	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.48E-20	79	137	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.0E-30	79	137	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-9	80	91	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-9	102	118	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGTLDQYSKA TSMPTDPTKK RKRVINKSVA ETLKKWKEYN EYLDSQGDGG NKPVRKVPAK 60 GSKKGCMKGK GGPENSVCNY RGVRQRTWGK WVAEIREPNR GPRLWLGTFP TAYEAALAYD 120 EAARAMYGPY ARLNVPDVLN STSSSKDNFS SATPSCYSPA ASSADSATTS THSEVCVYED 180 PKQNVYSQAE VCGKDVSSQA EVLAHHISSQ QHIEDGSQGV ENSTLRDEQK SQSENPLWTP 240 SENSLWTNDW HNYSMDEIFS FDELLGGIDA GMMGAEGYFN LGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-17	79	136	2	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	6e-17	79	141	5	68	ATERF1
3gcc_A	6e-17	79	141	5	68	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269\|PubMed:11798174}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.010G183700.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269\|PubMed:11798174}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF151455	0.0	EF151455.1 Populus trichocarpa DRE-binding protein 1 (DREB1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002315132.1	0.0	dehydration-responsive element-binding protein 2A isoform X1
Refseq	XP_024465134.1	0.0	dehydration-responsive element-binding protein 2A isoform X1
Swissprot	Q8LFR2	7e-56	DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBL	A9PL42	0.0	A9PL42_POPTR; DRE-binding protein 1
STRING	POPTR_0010s19100.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1175	34	106
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05410.2	7e-35	DRE-binding protein 2A

Link Out ? help Back to Top
Phytozome	Potri.010G183700.1
Entrez Gene	7464615

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]