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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G181300.1 | ||||||||
Common Name | POPTR_0010s18860g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 228aa MW: 24748.9 Da PI: 9.4291 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.2 | 3.7e-12 | 13 | 43 | 12 | 42 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifss 42 ++ kR+++i KKA EL +LCd+ v+v+i + Potri.010G181300.1 13 SYKKRQTTIEKKATELAILCDVPVCVVIKNN 43 89*************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.302 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-11 | 9 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-10 | 13 | 48 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MTPVTVNKGQ EKSYKKRQTT IEKKATELAI LCDVPVCVVI KNNTDGRVST VPQDRGQAVD 60 ILFSYKRKLQ AELVTGNAKS KVVKQDETWD PSFNNLPEEN LMEFMKELEE KSKMVDEAIK 120 RKQEVASKKG RGKRLHAGDG STEVGNKKAK GNIVLDSRTT NSSFSTDSGL DSSGSSTSSN 180 TGFSDGVSIP RRLTGGTFAG EIDNDTDIEA LPASTVRPVK LFGIFLN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 134 | RKQEVASKKGRGKRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G181300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316181.2 | 1e-166 | uncharacterized protein LOC7474401 | ||||
TrEMBL | A0A2K1YW43 | 1e-164 | A0A2K1YW43_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s18860.1 | 1e-165 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28287 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 3e-08 | AGAMOUS-like 103 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G181300.1 |
Entrez Gene | 7474401 |