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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.010G167500.1 |
Common Name | POPTR_0010s17470g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 453aa MW: 50310.9 Da PI: 7.5174 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.010G167500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 139 | 184 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++
Potri.010G167500.1 139 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 184
899*****************************.***********996 PP
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2 | Myb_DNA-binding | 53.2 | 6.6e-17 | 191 | 234 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r+++T+eE+e+l + ++++G++ W+ Iar ++ gRt++ +k++w+
Potri.010G167500.1 191 RKAFTEEEEERLMQTHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 234
789*******************.*********.***********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 453 aa
Download sequence Send
to blast |
MARKSVLYAT PYNNSRNVLA CYSSSAPSSS SSSPCSSMGM VYTDIGSLSL SPNFGMTTPA 60 SSSHEMENGR LTWGFPFMAN YHASSDAVAE VKVSDCSDGF GENNETINHN ANSSHEENPN 120 ENMISGRETD SGQSKLCARG HWRPAEDTKL KELVALYGPQ NWNLIAEKLE GRSGKSCRLR 180 WFNQLDPRIN RKAFTEEEEE RLMQTHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKF 240 REQSSAYRRR RLSQSVNRRM EEIPSFVGRD AGMKAEQPPC CPNIPSAGGL NNLSSYRIVN 300 FNGAGCGGVD NGLNGSPHMT IEGEAVSSIK VPQSGFCAQQ TPFDFFFDPK SKDMLGMFSQ 360 TRSWDRPNEE PHISGFYPQH YPPYLMATQQ SNYQNPYCFS DFTASTLPQE VSVSQPSPSS 420 PSVADQSRVS GHFETVAPPF IDFLGKSYQR GA*
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