 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.010G165700.1 |
| Common Name | POPTR_0010s17300g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MYB |
| Protein Properties |
Length: 383aa MW: 41707.7 Da PI: 6.7797 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.010G165700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ +v+++G g+W++ +++ g+ R++k+c++rw +yl
Potri.010G165700.1 14 KGPWTPEEDQKLLAYVEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+++ +E++ +++++++lG++ W+ Ia +++ +Rt++++k++w+++l
Potri.010G165700.1 67 RGKFSLQEEQTIIQLHALLGNR-WSVIATHLP-KRTDNEIKNYWNTHL 112
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MVRSQCCDKV GLKKGPWTPE EDQKLLAYVE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS VIATHLPKRT DNEIKNYWNT HLKKRLDKMG 120
IDPMTHKPKA DSFGSGSGHS KGAAHLSHMA QWESARLEAE ARLVRESKVI IPNPPPNRLG 180
STASAQVSDK RSAAPPARPQ CLDVLKAWQG VVFSMLSAGC SDSLESPTST LNFSENELAM 240
PLVGVQKNSA TTLAFATNNA PCNGGTTAIE FNSGNQFECF EKLNEAAQVK QNVDSSVALH 300
DISPDASNHN AWFDSATNEN APMGIIEGLS EILVCTSQDH NASFDGENIN DSCGGNLEEN 360
GNYWNSLLNL VDASPTGTSP VF*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC182709 | 0.0 | AC182709.2 Populus trichocarpa clone Pop1-85D11, complete sequence. |
