PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G154300.2
Common NamePOPTR_0010s16400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 499aa    MW: 54536.2 Da    PI: 7.8009
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G154300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.51.4e-41166241277
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         Cqv +C++dls+ k+yh+rhkvCevh+k+p+v+v+g eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  Potri.010G154300.2 166 CQVYDCNKDLSSSKDYHKRHKVCEVHTKTPQVIVNGNEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQ 241
                         **************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114131.795163240IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.105.9E-32164227IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-38165244IPR004333Transcription factor, SBP-box
PfamPF031102.2E-31166239IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDFWSYASEG KGLLFSDEID LSGDAFTRSR KASIGCDTEA AESAESLDLG FSEIPRKPFH  60
GSKTGAGMFG GSCVGIDSSK LVVGSPNCMI ASNSSMESRS NHSNSLMESN SQDSSLFDLK  120
LGRLADCIDA QNSRFSKERF LLSSASPTTQ AKRAPMASLR PRISFCQVYD CNKDLSSSKD  180
YHKRHKVCEV HTKTPQVIVN GNEQRFCQQC SRFHLLVEFD DGKRSCRKRL AGHNERRRKP  240
QFGTKFLGTS LAKRTSFLFP NMLPGGTFCP QSYEEDNWRK HVKLEENSIY SSPSAIPIRN  300
GQLLPRSFLH LHGNRIQKTC GISPLDTEDL TISNTATTIN ELAGVSHSSC ALSLLSAAES  360
QDLSHSAGNI MVRPLVSQAG GACQTLGIAN KSLGGGSSEK YVPIGINSFG MNFIEVDNMG  420
PFGVSGSGHA ADLKVETDGF LHHSDFLNAK HCVSPANEST VDWLQLSSHL QRVEQQRNSM  480
KVKHENEDFC SFGATYRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28163239884squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G154300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091030.0AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467055.10.0squamosa promoter-binding-like protein 6 isoform X2
TrEMBLA0A2K1YUI30.0A0A2K1YUI3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16400.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-42SBP family protein